Variant report

Variant	rs12256455
Chromosome Location	chr10:56039599-56039600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10825295	0.83[CHB][hapmap]
rs11004208	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11004223	0.84[CHB][hapmap]
rs11004230	0.84[CHB][hapmap]
rs11591584	0.83[CHB][hapmap]
rs11592872	0.82[CHB][hapmap]
rs11594789	0.82[CHB][hapmap]
rs1159864	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12241144	0.84[CHB][hapmap]
rs12242118	1.00[CHB][hapmap]
rs12247773	0.81[CHB][hapmap]
rs12255969	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12262364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571998	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs1342287	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs1342303	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs1342304	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs1561670	0.84[CHB][hapmap]
rs1578667	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs1578668	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs16905888	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs16905927	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs17725634	0.84[ASW][hapmap]
rs1857129	0.81[YRI][hapmap]
rs1935474	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs2043997	0.84[CHB][hapmap]
rs2043998	0.84[CHB][hapmap]
rs2043999	0.84[CHB][hapmap]
rs2044002	0.84[CHB][hapmap]
rs2153822	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs2583021	0.83[CHB][hapmap]
rs2583030	0.81[CHB][hapmap]
rs2795923	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs2795924	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2795927	1.00[CHB][hapmap]
rs6481088	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7067767	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7077543	0.82[CHB][hapmap]
rs7080899	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs73243269	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7901023	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7906254	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7914488	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs7921798	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs966910	0.84[CHB][hapmap]
rs997064	0.84[CHB][hapmap]
rs997065	0.84[CHB][hapmap]
rs997066	0.84[CHB][hapmap]
rs997067	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12256455	MBL2	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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