Variant report

Variant	rs2043999
Chromosome Location	chr10:56038675-56038676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10825295	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825321	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs11004223	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11004230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11004272	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs1112065	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs11591584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1159864	0.84[CHB][hapmap]
rs12241144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12242118	0.84[CHB][hapmap]
rs12247773	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12255969	0.84[CHB][hapmap]
rs12256455	0.84[CHB][hapmap]
rs12262364	0.84[CHB][hapmap]
rs12571998	0.84[CHB][hapmap]
rs1342287	0.84[CHB][hapmap]
rs1342303	0.84[CHB][hapmap]
rs1342304	0.84[CHB][hapmap]
rs1561670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1578667	0.84[CHB][hapmap]
rs1578668	0.84[CHB][hapmap]
rs16905888	0.84[CHB][hapmap]
rs16905927	0.84[CHB][hapmap]
rs1935474	0.84[CHB][hapmap]
rs2043997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2043998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2044002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2153822	0.84[CHB][hapmap]
rs2795923	0.84[CHB][hapmap]
rs2795924	0.90[CHB][hapmap]
rs2795927	0.83[CHB][hapmap]
rs6481088	0.84[CHB][hapmap]
rs7067767	0.83[CHB][hapmap]
rs7080899	0.84[CHB][hapmap]
rs7901023	0.84[CHB][hapmap]
rs7906254	0.84[CHB][hapmap]
rs7914488	0.84[CHB][hapmap]
rs857370	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs966910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs997064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs997065	1.00[CHB][hapmap]
rs997066	1.00[CHB][hapmap]
rs997067	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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