Variant report

Variant	rs11004272
Chromosome Location	chr10:56149725-56149726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10825295	0.83[CHB][hapmap]
rs10825321	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10825324	0.92[ASW][hapmap]
rs11004223	0.83[CEU][hapmap];0.84[CHB][hapmap]
rs11004230	0.84[CEU][hapmap];0.84[CHB][hapmap]
rs11004267	0.84[CHD][hapmap]
rs11004270	0.84[CHD][hapmap]
rs11004277	1.00[ASW][hapmap];0.93[YRI][hapmap]
rs1112065	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11591584	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs11592872	0.82[CHB][hapmap]
rs11594789	0.82[CHB][hapmap]
rs12241144	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs12247773	0.81[CHB][hapmap]
rs1561670	0.82[ASW][hapmap];0.81[CEU][hapmap];0.84[CHB][hapmap];0.91[MEX][hapmap]
rs1758816	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2028440	0.87[CHD][hapmap]
rs2043997	0.84[CEU][hapmap];0.84[CHB][hapmap]
rs2043998	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs2043999	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs2044002	0.81[CEU][hapmap];0.84[CHB][hapmap];0.86[MEX][hapmap]
rs2583030	0.81[CHB][hapmap]
rs7077543	0.82[CHB][hapmap]
rs7896552	1.00[ASW][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs7915792	1.00[ASW][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs966910	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs9943342	0.91[CHB][hapmap]
rs997064	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs997065	0.84[CHB][hapmap]
rs997066	0.84[CHB][hapmap]
rs997067	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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