Variant report

Variant	rs7896552
Chromosome Location	chr10:56153917-56153918
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10825308	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825313	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825321	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs10825324	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11004201	1.00[CHB][hapmap]
rs11004222	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs11004225	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs11004233	1.00[CHB][hapmap]
rs11004249	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004251	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004272	1.00[ASW][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs11004277	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.94[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs11004281	0.85[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs11004282	0.85[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs11004283	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11004284	0.85[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs11004285	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs11004288	1.00[JPT][hapmap]
rs11004289	1.00[JPT][hapmap]
rs11004296	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs11004297	0.92[CEU][hapmap]
rs11597868	0.89[CEU][hapmap];0.89[CHD][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap]
rs12146349	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs12146398	0.85[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs12357807	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs12358864	1.00[CHB][hapmap]
rs12762518	1.00[CHB][hapmap]
rs12764585	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs12768342	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12768441	1.00[CHB][hapmap]
rs12770667	1.00[CHB][hapmap]
rs12780283	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs12781673	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs1342310	0.89[CHD][hapmap];0.89[MEX][hapmap]
rs1561670	0.82[ASW][hapmap]
rs1758826	1.00[JPT][hapmap]
rs17728345	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs1888972	0.92[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs1888973	0.89[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap]
rs1930171	0.89[CHD][hapmap];0.89[MEX][hapmap]
rs2151077	0.96[CEU][hapmap];0.89[CHD][hapmap];0.91[TSI][hapmap]
rs2151078	0.89[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs2183973	0.89[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs2185748	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs2384454	0.81[CHD][hapmap]
rs2384455	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs2891523	0.92[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs4935107	0.89[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs4935108	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs4935520	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs6481096	0.81[CEU][hapmap]
rs7070060	0.89[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs7901367	1.00[CHB][hapmap]
rs7908639	1.00[JPT][hapmap]
rs7915792	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7916907	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56153000-56154200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:56153600-56155200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:56153800-56155200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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