Variant report

Variant	rs11004281
Chromosome Location	chr10:56173059-56173060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10825308	1.00[JPT][hapmap]
rs10825313	1.00[JPT][hapmap]
rs10825316	0.82[CHD][hapmap]
rs10825324	0.89[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs11004249	1.00[JPT][hapmap]
rs11004251	1.00[JPT][hapmap]
rs11004277	0.85[CEU][hapmap];0.87[TSI][hapmap]
rs11004280	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11004282	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11004283	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[YRI][hapmap]
rs11004284	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11004285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11004288	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004289	1.00[JPT][hapmap]
rs11004296	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs11004297	0.92[CEU][hapmap]
rs11004303	0.86[EUR][1000 genomes]
rs11597868	0.89[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs11598050	0.84[EUR][1000 genomes]
rs11599664	0.85[EUR][1000 genomes]
rs12146349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12146398	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1219862	0.82[CHD][hapmap]
rs12764585	1.00[JPT][hapmap]
rs12768342	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs12781673	0.89[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12782473	0.84[EUR][1000 genomes]
rs1342310	1.00[CHD][hapmap];0.84[GIH][hapmap]
rs1758826	1.00[JPT][hapmap]
rs17728345	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs1888972	0.92[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs1888973	0.89[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1930171	1.00[CHD][hapmap];0.87[GIH][hapmap]
rs2151077	0.88[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap]
rs2151078	0.89[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs2183973	0.89[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs2185748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2384455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2583026	0.82[CHD][hapmap]
rs2795918	0.82[CHD][hapmap]
rs2891523	0.92[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs4935107	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs4935108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4935517	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4935520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs6481096	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap]
rs66677889	0.85[EUR][1000 genomes]
rs67040242	0.85[EUR][1000 genomes]
rs7070060	0.89[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs7896552	0.85[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs7908639	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7915792	0.85[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs7916907	1.00[JPT][hapmap]
rs981497	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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