Variant report

Variant	rs2583026
Chromosome Location	chr10:56108631-56108632
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10763098	0.81[CEU][hapmap];0.88[GIH][hapmap];0.90[MEX][hapmap]
rs10825316	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs11004222	0.82[CHD][hapmap]
rs11004225	0.82[CHD][hapmap]
rs11004255	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11004281	0.82[CHD][hapmap]
rs11004282	0.82[CHD][hapmap]
rs11004284	0.82[CHD][hapmap]
rs11597868	0.82[CHD][hapmap]
rs12146398	0.82[CHD][hapmap]
rs1219862	0.83[CHD][hapmap]
rs12357807	0.82[CHD][hapmap]
rs12358062	0.81[CEU][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]
rs12780283	0.82[CHD][hapmap]
rs1342280	0.81[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs1342310	0.82[CHD][hapmap]
rs1418367	0.81[CEU][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap]
rs1888972	0.82[CHD][hapmap]
rs1888973	0.82[CHD][hapmap]
rs1930171	0.82[CHD][hapmap]
rs2151077	0.82[CHD][hapmap]
rs2151078	0.82[CHD][hapmap]
rs2183973	0.82[CHD][hapmap]
rs2384454	0.85[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs2795918	0.83[CHD][hapmap]
rs2891523	0.82[CHD][hapmap]
rs4935107	0.82[CHD][hapmap]
rs7070060	0.82[CHD][hapmap]
rs7092253	0.80[CEU][hapmap]
rs7350458	0.81[CEU][hapmap]
rs7915662	0.91[CEU][hapmap]
rs7917641	0.81[CEU][hapmap]
rs857369	0.81[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs920526	0.85[CHD][hapmap];0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv895434	chr10:56076004-56119975	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
9	nsv895435	chr10:56076975-56108631	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
10	nsv895436	chr10:56076975-56114857	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv895437	chr10:56083891-56132046	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
12	nsv895438	chr10:56083891-56146761	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv550953	chr10:56084933-56126202	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv467218	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
15	nsv550954	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
16	nsv550955	chr10:56084933-56146761	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
17	nsv895439	chr10:56084933-56146761	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
18	nsv467219	chr10:56087423-56126202	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
19	nsv550956	chr10:56087423-56126202	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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