Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10825316	0.83[CHD][hapmap]
rs11004270	0.91[GIH][hapmap]
rs11004281	0.82[CHD][hapmap]
rs11004282	0.82[CHD][hapmap]
rs11004284	0.82[CHD][hapmap]
rs11597868	0.82[CHD][hapmap]
rs12146398	0.82[CHD][hapmap]
rs1219862	0.91[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs1342310	0.82[CHD][hapmap]
rs1758826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888972	0.82[CHD][hapmap]
rs1888973	0.82[CHD][hapmap]
rs1930171	0.82[CHD][hapmap]
rs2151077	0.82[CHD][hapmap]
rs2151078	0.82[CHD][hapmap]
rs2183973	0.82[CHD][hapmap]
rs2583026	0.83[CHD][hapmap]
rs2891523	0.82[CHD][hapmap]
rs4935107	0.82[CHD][hapmap]
rs7070060	0.82[CHD][hapmap]
rs7476422	0.93[GIH][hapmap]
rs7915662	0.82[CHB][hapmap]
rs920526	0.85[CHD][hapmap]
rs9416306	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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