Variant report
| Variant | rs7476422 |
|---|---|
| Chromosome Location | chr10:56204291-56204292 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10509011 | 0.81[CHB][hapmap] |
| rs10740579 | 0.81[CHB][hapmap] |
| rs10825306 | 0.81[CHB][hapmap] |
| rs10825307 | 0.81[CHB][hapmap] |
| rs11004231 | 0.86[CHB][hapmap] |
| rs11004239 | 0.81[CHB][hapmap] |
| rs11004267 | 0.82[CEU][hapmap] |
| rs11004270 | 0.93[GIH][hapmap] |
| rs11004275 | 0.82[CEU][hapmap] |
| rs1156657 | 0.81[CHB][hapmap] |
| rs1159865 | 0.81[CHB][hapmap] |
| rs1219862 | 0.93[GIH][hapmap] |
| rs12354432 | 0.81[CHB][hapmap] |
| rs1319836 | 0.81[CHB][hapmap] |
| rs1342281 | 0.81[CHB][hapmap] |
| rs1342285 | 0.81[CHB][hapmap] |
| rs1342292 | 0.81[CHB][hapmap] |
| rs1342300 | 0.81[CHB][hapmap] |
| rs1342305 | 0.81[CHB][hapmap] |
| rs1418374 | 0.81[CHB][hapmap] |
| rs1758816 | 0.92[CHB][hapmap] |
| rs1774661 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1935468 | 0.81[CHB][hapmap] |
| rs2050999 | 0.82[CEU][hapmap] |
| rs2795918 | 0.93[GIH][hapmap] |
| rs4471336 | 0.81[CHB][hapmap] |
| rs7078666 | 0.81[CHB][hapmap] |
| rs7342027 | 0.81[CHB][hapmap] |
| rs857368 | 0.81[CHB][hapmap] |
| rs857370 | 0.85[CHB][hapmap] |
| rs857371 | 0.81[CHB][hapmap] |
| rs857373 | 0.81[CHB][hapmap] |
| rs857374 | 0.81[CHB][hapmap] |
| rs857392 | 0.81[CHB][hapmap] |
| rs857394 | 0.81[CHB][hapmap] |
| rs857395 | 0.81[CHB][hapmap] |
| rs9415335 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs965266 | 0.81[CHB][hapmap] |
| rs965267 | 0.81[CHB][hapmap] |
| rs978842 | 0.81[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044020 | chr10:56038546-56224736 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv540634 | chr10:56038546-56224736 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv831879 | chr10:56059973-56210729 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1052386 | chr10:56075990-56273476 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
Variant related diseases (count:1)
| Disease | PMID | Source |
|---|---|---|
| Adverse response to chemotherapy in breast cancer (alopecia) | 24025145 | GWAS catalog |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:56203800-56205200 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr10:56204000-56204600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
