Variant report

Variant	rs2050999
Chromosome Location	chr10:56157208-56157209
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10509011	0.86[CEU][hapmap]
rs10740579	0.86[CEU][hapmap]
rs10825306	0.86[CEU][hapmap]
rs10825307	0.84[CEU][hapmap]
rs10825319	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11004239	0.86[CEU][hapmap]
rs11004267	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004270	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11004276	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1156657	0.86[CEU][hapmap]
rs1159865	0.86[CEU][hapmap]
rs1219862	1.00[YRI][hapmap]
rs12354432	0.86[CEU][hapmap]
rs1319836	0.86[CEU][hapmap]
rs1342281	0.86[CEU][hapmap]
rs1342285	0.86[CEU][hapmap]
rs1342292	0.86[CEU][hapmap]
rs1342294	0.81[CEU][hapmap]
rs1342300	0.86[CEU][hapmap]
rs1342305	0.86[CEU][hapmap]
rs1418374	0.86[CEU][hapmap]
rs1758816	0.82[CHB][hapmap]
rs1935468	0.86[CEU][hapmap]
rs1970519	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1975405	0.84[CHB][hapmap]
rs2028440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2078091	0.85[CHB][hapmap]
rs2384424	0.85[CHB][hapmap]
rs2384425	0.83[CHB][hapmap]
rs4269840	0.90[CEU][hapmap]
rs4411207	0.86[CEU][hapmap]
rs4471336	0.86[CEU][hapmap]
rs7073678	0.84[CHB][hapmap]
rs7078666	0.89[CEU][hapmap]
rs7087862	0.83[CHB][hapmap]
rs7092744	0.81[CHB][hapmap]
rs7342027	0.86[CEU][hapmap]
rs7476422	0.82[CEU][hapmap]
rs7918002	0.84[CEU][hapmap]
rs7919725	0.86[CEU][hapmap]
rs857368	0.82[CEU][hapmap]
rs857371	0.86[CEU][hapmap]
rs857373	0.86[CEU][hapmap]
rs857374	0.86[CEU][hapmap]
rs857392	0.85[CEU][hapmap]
rs857394	0.86[CEU][hapmap]
rs857395	0.86[CEU][hapmap]
rs865091	0.81[CEU][hapmap]
rs965265	0.86[CEU][hapmap]
rs965266	0.86[CEU][hapmap]
rs965267	0.90[CEU][hapmap]
rs978842	0.86[CEU][hapmap]
rs9943342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56155200-56157800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr10:56156800-56160600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:56157200-56162200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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