Variant report

Variant	rs2078091
Chromosome Location	chr10:56030015-56030016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1016644	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1020207	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10490983	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10763091	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10763092	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10763094	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10825276	0.91[CEU][hapmap]
rs10825284	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs10825289	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10825292	0.92[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs11004153	0.83[CHB][hapmap]
rs11004188	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11004189	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11004190	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11004267	0.85[CHB][hapmap]
rs11004270	0.85[CHB][hapmap]
rs11004275	0.85[CHB][hapmap]
rs12761142	0.92[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs1970519	0.85[CHB][hapmap]
rs1975405	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1975410	0.96[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1985567	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2028440	0.85[CHB][hapmap]
rs2043993	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2043995	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2050999	0.85[CHB][hapmap]
rs2384423	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2384424	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2384425	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384427	0.96[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2384429	0.92[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2384430	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2384432	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2891509	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2891510	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2891511	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4542313	0.84[CEU][hapmap]
rs4556451	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4935106	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6481076	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7067938	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7068210	0.83[CEU][hapmap]
rs7072332	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7073678	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7080683	0.83[CEU][hapmap]
rs7081730	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7087057	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7087862	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7092744	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7093540	0.91[CEU][hapmap]
rs7093889	0.84[CEU][hapmap];0.84[CHB][hapmap]
rs7094733	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7099755	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7099893	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs721825	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs7897570	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs7912548	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7915391	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs7917091	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9804198	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9943342	0.91[CHB][hapmap]
rs996320	0.83[CEU][hapmap];0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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