Variant report

Variant	rs10825289
Chromosome Location	chr10:56025413-56025414
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1016644	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1020207	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10490983	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763091	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763092	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10825276	0.84[CHB][hapmap]
rs10825279	0.84[CHB][hapmap]
rs10825284	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10825292	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11004142	0.84[CHB][hapmap]
rs11004153	0.92[CHB][hapmap]
rs11004188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11004189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11004190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12761142	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1975405	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1975410	0.91[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap]
rs1985567	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2043993	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2043995	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2078091	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2384423	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384424	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2384425	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384427	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2384429	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2384430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2891509	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2891510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2891511	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4542313	0.84[CHB][hapmap]
rs4556451	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4935106	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6481076	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7067938	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7068210	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs7072332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7073678	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7080683	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs7081730	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7087057	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7087862	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7092744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7093540	0.84[CHB][hapmap]
rs7093889	0.87[CEU][hapmap];0.92[CHB][hapmap]
rs7094733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7099755	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7099893	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs721825	0.90[CEU][hapmap];0.92[CHB][hapmap]
rs7897570	0.92[CHB][hapmap]
rs7912548	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7915391	0.86[CEU][hapmap];0.92[CHB][hapmap]
rs7917091	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9804198	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9943342	0.82[CHB][hapmap]
rs996320	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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