Variant report

Variant	rs4542313
Chromosome Location	chr10:55991114-55991115
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1016644	0.84[CHB][hapmap]
rs1020207	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs10490983	0.84[CHB][hapmap]
rs10763086	0.96[CEU][hapmap]
rs10763091	0.84[CHB][hapmap]
rs10763092	0.84[CHB][hapmap]
rs10763094	0.84[CHB][hapmap]
rs10825276	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[TSI][hapmap]
rs10825279	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs10825284	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs10825289	0.84[CHB][hapmap]
rs10825292	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs11004142	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs11004153	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11004188	0.84[CHB][hapmap]
rs11004189	0.83[CHB][hapmap]
rs11004190	0.84[CHB][hapmap]
rs12761142	0.92[CEU][hapmap];0.84[CHB][hapmap]
rs1975405	0.81[CHB][hapmap]
rs1985567	0.84[CEU][hapmap];0.84[CHB][hapmap]
rs2043995	0.83[CHB][hapmap]
rs2078091	0.84[CEU][hapmap]
rs2384422	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2384423	0.84[CEU][hapmap];0.84[CHB][hapmap]
rs2384424	0.92[CHB][hapmap]
rs2384427	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs2384429	0.92[CEU][hapmap];0.84[CHB][hapmap]
rs2384430	0.84[CHB][hapmap]
rs2384432	0.84[CHB][hapmap]
rs2891509	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs2891510	0.82[CHB][hapmap]
rs4556451	0.84[CHB][hapmap]
rs4935106	0.84[CHB][hapmap]
rs6481076	0.84[CHB][hapmap]
rs7067938	0.84[CHB][hapmap]
rs7068210	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7072332	0.82[CHB][hapmap]
rs7073678	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs7080683	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7081730	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs7087057	0.84[CHB][hapmap]
rs7087862	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs7093302	0.85[TSI][hapmap]
rs7093540	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[TSI][hapmap]
rs7093889	0.84[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap]
rs7094733	0.82[CHB][hapmap]
rs7099755	0.83[CHB][hapmap]
rs7099893	0.83[CHB][hapmap]
rs721825	0.83[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap]
rs7897570	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7912548	0.82[CHB][hapmap]
rs7915391	0.83[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap]
rs7917091	0.83[CHB][hapmap]
rs9804198	0.83[CHB][hapmap]
rs9943342	0.81[CHB][hapmap]
rs996320	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv467215	chr10:55943184-56019194	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv550951	chr10:55943184-56019194	Active TSS ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3438183	chr10:55968995-55994692	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55990800-55991400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:55990800-55991600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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