Variant report

Variant	rs9943342
Chromosome Location	chr10:56162695-56162696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55757420..55758328-chr10:56162156..56162806,2	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1016644	0.82[CHB][hapmap]
rs1020207	0.82[CHB][hapmap]
rs10490983	0.82[CHB][hapmap]
rs10509011	0.86[CEU][hapmap]
rs10740579	0.86[CEU][hapmap]
rs10763091	0.82[CHB][hapmap]
rs10763092	0.82[CHB][hapmap]
rs10763094	0.82[CHB][hapmap]
rs10825284	0.82[CHB][hapmap]
rs10825289	0.82[CHB][hapmap]
rs10825292	0.81[CHB][hapmap]
rs10825306	0.86[CEU][hapmap]
rs10825307	0.84[CEU][hapmap]
rs10825319	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10825321	0.91[CHB][hapmap]
rs11004188	0.82[CHB][hapmap]
rs11004189	0.82[CHB][hapmap]
rs11004190	0.82[CHB][hapmap]
rs11004223	0.83[CHB][hapmap]
rs11004239	0.86[CEU][hapmap]
rs11004267	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004270	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004272	0.91[CHB][hapmap]
rs11004275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11004276	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1112065	0.90[CHB][hapmap]
rs1156657	0.86[CEU][hapmap]
rs1159865	0.86[CEU][hapmap]
rs1219862	1.00[YRI][hapmap]
rs12354432	0.86[CEU][hapmap]
rs12761142	0.82[CHB][hapmap]
rs1319836	0.86[CEU][hapmap]
rs1342281	0.86[CEU][hapmap]
rs1342285	0.86[CEU][hapmap]
rs1342292	0.86[CEU][hapmap]
rs1342294	0.81[CEU][hapmap]
rs1342300	0.86[CEU][hapmap]
rs1342305	0.86[CEU][hapmap]
rs1418374	0.86[CEU][hapmap]
rs1758816	0.81[CHB][hapmap]
rs1935468	0.86[CEU][hapmap]
rs1970519	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1975405	0.90[CHB][hapmap]
rs1985567	0.82[CHB][hapmap]
rs2028440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2043995	0.82[CHB][hapmap]
rs2050999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2078091	0.91[CHB][hapmap]
rs2384423	0.82[CHB][hapmap]
rs2384424	0.92[CHB][hapmap]
rs2384425	0.89[CHB][hapmap]
rs2384427	0.82[CHB][hapmap]
rs2384429	0.82[CHB][hapmap]
rs2384430	0.82[CHB][hapmap]
rs2384432	0.82[CHB][hapmap]
rs2583021	0.81[CHB][hapmap]
rs2891509	0.82[CHB][hapmap]
rs2891511	0.88[CHB][hapmap]
rs4269840	0.90[CEU][hapmap]
rs4411207	0.86[CEU][hapmap]
rs4471336	0.86[CEU][hapmap]
rs4542313	0.81[CHB][hapmap]
rs4556451	0.82[CHB][hapmap]
rs4935106	0.82[CHB][hapmap]
rs6481076	0.82[CHB][hapmap]
rs7067938	0.82[CHB][hapmap]
rs7068210	0.82[CHB][hapmap]
rs7072332	0.81[CHB][hapmap]
rs7073678	0.90[CHB][hapmap]
rs7078666	0.89[CEU][hapmap]
rs7080683	0.82[CHB][hapmap]
rs7081730	0.82[CHB][hapmap]
rs7087057	0.82[CHB][hapmap]
rs7087862	0.82[CHB][hapmap]
rs7092744	0.90[CHB][hapmap]
rs7094733	0.81[CHB][hapmap]
rs7099755	0.82[CHB][hapmap]
rs7099893	0.82[CHB][hapmap]
rs7342027	0.86[CEU][hapmap]
rs7912548	0.81[CHB][hapmap]
rs7917091	0.82[CHB][hapmap]
rs7918002	0.84[CEU][hapmap]
rs7919725	0.86[CEU][hapmap]
rs857368	0.82[CEU][hapmap]
rs857371	0.86[CEU][hapmap]
rs857373	0.86[CEU][hapmap]
rs857374	0.86[CEU][hapmap]
rs857392	0.85[CEU][hapmap]
rs857394	0.86[CEU][hapmap]
rs857395	0.86[CEU][hapmap]
rs865091	0.81[CEU][hapmap]
rs965265	0.86[CEU][hapmap]
rs965266	0.86[CEU][hapmap]
rs965267	0.90[CEU][hapmap]
rs978842	0.86[CEU][hapmap]
rs9804198	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv516160	chr10:56158812-56163201	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links