Variant report

Variant	rs1156657
Chromosome Location	chr10:56044994-56044995
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10509011	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10740579	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10825306	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10825307	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11004231	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11004239	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11004267	0.81[CEU][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];0.96[MEX][hapmap]
rs11004270	0.81[CEU][hapmap];0.82[CHD][hapmap];0.92[MEX][hapmap]
rs11004275	0.86[CEU][hapmap]
rs1159865	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap]
rs12354432	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap]
rs1319836	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap]
rs1342281	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap]
rs1342285	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1342292	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1342294	0.87[CEU][hapmap]
rs1342300	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1342305	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1361712	0.81[CHB][hapmap]
rs1418374	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1561670	0.82[CHD][hapmap]
rs1774661	0.81[CHB][hapmap]
rs1935468	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs1970519	0.81[CEU][hapmap]
rs2028440	0.86[CEU][hapmap];0.89[GIH][hapmap];0.96[MEX][hapmap]
rs2044002	0.82[CHD][hapmap]
rs2050999	0.86[CEU][hapmap]
rs2153821	0.81[CHB][hapmap]
rs2795930	0.81[CHB][hapmap]
rs4269840	0.95[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs4411207	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4471336	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6481084	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7078666	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7342027	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7476422	0.81[CHB][hapmap]
rs7918002	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7919725	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs857368	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs857370	0.87[CHB][hapmap]
rs857371	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs857373	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs857374	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap]
rs857392	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs857394	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap]
rs857395	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs865091	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap]
rs965265	0.90[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap]
rs965266	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap]
rs965267	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs978842	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs978843	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9943342	0.86[CEU][hapmap]
rs997065	0.82[JPT][hapmap]
rs997066	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs997067	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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