Variant report

Variant	rs857370
Chromosome Location	chr10:56072411-56072412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10509011	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs10740579	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs10825295	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10825306	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs10825307	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs11004223	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11004230	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11004231	0.86[CHB][hapmap]
rs11004239	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs1156657	0.87[CHB][hapmap]
rs11591584	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1159865	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs12241144	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12247773	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs12354432	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs1319836	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs1342281	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs1342285	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs1342292	0.86[CEU][hapmap];0.87[CHB][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1342294	0.82[CEU][hapmap]
rs1342300	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs1342305	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs1418374	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs1561670	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1935468	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs2043997	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2043998	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs2043999	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2044002	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2795924	0.82[CHB][hapmap]
rs4269840	0.94[CEU][hapmap]
rs4411207	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4471336	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs6481084	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7078666	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs7342027	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs7476422	0.85[CHB][hapmap]
rs7918002	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7919725	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs857368	0.80[CEU][hapmap];0.87[CHB][hapmap]
rs857371	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs857373	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs857374	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs857392	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs857394	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs857395	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs865091	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs965265	0.90[CEU][hapmap];0.81[CHB][hapmap]
rs965266	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs965267	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs966910	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs978842	0.87[CHB][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs978843	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs997064	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs997065	0.86[CHB][hapmap]
rs997066	0.86[CHB][hapmap]
rs997067	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1048014	chr10:56053413-56104109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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