Variant report

Variant	rs7918002
Chromosome Location	chr10:56041626-56041627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10509011	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10740579	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10825306	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10825307	0.81[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs11004231	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs11004239	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs11004267	0.83[CEU][hapmap]
rs11004275	0.84[CEU][hapmap]
rs1156657	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1159865	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs12354432	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1319836	0.83[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs1342281	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1342285	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1342292	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1342294	0.85[CEU][hapmap]
rs1342300	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1342305	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1361712	0.90[CHB][hapmap]
rs1418374	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs1935468	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1970519	0.84[CEU][hapmap]
rs2028440	0.83[CEU][hapmap]
rs2050999	0.84[CEU][hapmap]
rs2153821	0.90[CHB][hapmap]
rs2795929	0.90[CHB][hapmap]
rs2795930	0.90[CHB][hapmap]
rs4269840	0.89[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4411207	0.94[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4471336	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs6481084	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7078666	0.87[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7342027	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7919725	0.94[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs857368	0.94[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs857371	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs857373	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs857374	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs857392	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs857394	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs857395	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs865091	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs965265	0.83[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs965266	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs965267	0.82[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs978842	0.94[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs978843	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9943342	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56041600-56042200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr10:56041600-56042200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:56041600-56042200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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