Variant report

Variant	rs1342292
Chromosome Location	chr10:56097864-56097865
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10509011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004267	0.81[CEU][hapmap]
rs11004270	0.81[CEU][hapmap]
rs11004275	0.86[CEU][hapmap]
rs1156657	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1159865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12354432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1319836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1342281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1342285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1342294	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1342300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1342305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1361712	0.81[CHB][hapmap]
rs1418374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1935468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1970519	0.82[CEU][hapmap]
rs2028440	0.86[CEU][hapmap]
rs2050999	0.86[CEU][hapmap]
rs2153821	0.81[CHB][hapmap]
rs2795930	0.81[CHB][hapmap]
rs4269840	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4411207	0.91[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4471336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6481084	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7078666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7342027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7476422	0.81[CHB][hapmap]
rs7918002	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7919725	0.91[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs857368	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs857370	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs857371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs857373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs857374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs857392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs857394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs857395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs865091	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs965265	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs965266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs965267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs978842	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs978843	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9943342	0.86[CEU][hapmap]
rs997065	0.82[CEU][hapmap]
rs997066	0.82[CEU][hapmap]
rs997067	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1048014	chr10:56053413-56104109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv467217	chr10:56072949-56104585	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv550952	chr10:56072949-56104585	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv895434	chr10:56076004-56119975	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
12	nsv895435	chr10:56076975-56108631	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv895436	chr10:56076975-56114857	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv895437	chr10:56083891-56132046	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
15	nsv895438	chr10:56083891-56146761	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
16	nsv550953	chr10:56084933-56126202	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
17	nsv467218	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
18	nsv550954	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
19	nsv550955	chr10:56084933-56146761	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
20	nsv895439	chr10:56084933-56146761	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
21	nsv467219	chr10:56087423-56126202	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
22	nsv550956	chr10:56087423-56126202	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56097600-56098200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:56097800-56098400	Active TSS	Primary hematopoietic stem cells	blood
3	chr10:56097800-56099000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:56097800-56099000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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