Variant report

Variant	rs11004270
Chromosome Location	chr10:56147358-56147359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10509011	0.81[CEU][hapmap]
rs10740579	0.81[CEU][hapmap]
rs10825306	0.81[CEU][hapmap]
rs10825319	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11004239	0.81[CEU][hapmap]
rs11004267	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs11004272	0.84[CHD][hapmap]
rs11004275	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004276	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1156657	0.81[CEU][hapmap];0.82[CHD][hapmap];0.92[MEX][hapmap]
rs1159865	0.81[CEU][hapmap];0.82[CHD][hapmap];0.84[MEX][hapmap]
rs1219862	0.91[GIH][hapmap]
rs12354432	0.81[CEU][hapmap];0.85[CHD][hapmap];0.84[MEX][hapmap]
rs1319836	0.81[CEU][hapmap];0.82[CHD][hapmap];0.84[MEX][hapmap]
rs1342281	0.81[CEU][hapmap];0.85[CHD][hapmap]
rs1342285	0.81[CEU][hapmap]
rs1342292	0.81[CEU][hapmap]
rs1342294	0.81[CEU][hapmap]
rs1342300	0.81[CEU][hapmap]
rs1342305	0.81[CEU][hapmap]
rs1418374	0.81[CEU][hapmap]
rs1758816	0.82[CHB][hapmap]
rs1935468	0.81[CEU][hapmap];0.82[CHD][hapmap];0.92[MEX][hapmap]
rs1970519	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1975405	0.84[CHB][hapmap]
rs2028440	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap]
rs2050999	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2078091	0.85[CHB][hapmap]
rs2384424	0.85[CHB][hapmap]
rs2384425	0.83[CHB][hapmap]
rs2795918	0.91[GIH][hapmap]
rs4269840	0.85[CEU][hapmap]
rs4411207	0.81[CEU][hapmap]
rs4471336	0.81[CEU][hapmap]
rs7073678	0.84[CHB][hapmap]
rs7078666	0.83[CEU][hapmap]
rs7087862	0.83[CHB][hapmap]
rs7092744	0.81[CHB][hapmap]
rs7342027	0.81[CEU][hapmap]
rs7476422	0.93[GIH][hapmap]
rs7919725	0.81[CEU][hapmap]
rs857371	0.81[CEU][hapmap]
rs857373	0.81[CEU][hapmap];0.85[CHD][hapmap];0.92[MEX][hapmap]
rs857374	0.81[CEU][hapmap];0.85[CHD][hapmap]
rs857392	0.85[CEU][hapmap]
rs857394	0.81[CEU][hapmap];0.82[CHD][hapmap]
rs857395	0.81[CEU][hapmap];0.82[CHD][hapmap];0.92[MEX][hapmap]
rs865091	0.82[CHD][hapmap]
rs965265	0.81[CEU][hapmap];0.82[CHD][hapmap];0.87[MEX][hapmap]
rs965266	0.81[CEU][hapmap];0.82[CHD][hapmap];0.84[MEX][hapmap]
rs965267	0.84[CEU][hapmap]
rs978842	0.81[CEU][hapmap]
rs9943342	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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