Variant report

Variant	rs2384424
Chromosome Location	chr10:56013045-56013046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1016644	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1020207	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10490983	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10763091	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10763092	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10763094	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10825276	0.83[CEU][hapmap]
rs10825284	0.91[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.86[TSI][hapmap]
rs10825289	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10825292	0.84[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs11004153	0.85[CHB][hapmap]
rs11004188	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11004189	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11004190	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11004267	0.85[CHB][hapmap]
rs11004270	0.85[CHB][hapmap]
rs11004275	0.85[CHB][hapmap]
rs1112065	0.83[CHB][hapmap]
rs12761142	0.84[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs1970519	0.85[CHB][hapmap]
rs1975405	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1975410	0.87[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs1985567	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2028440	0.85[CHB][hapmap]
rs2043993	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2043995	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2050999	0.85[CHB][hapmap]
rs2078091	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2384423	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2384425	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2384427	0.87[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2384429	0.83[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2384430	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2384432	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2891509	0.91[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.82[TSI][hapmap]
rs2891510	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2891511	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4542313	0.92[CHB][hapmap]
rs4556451	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4935106	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6481076	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7067938	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7068210	0.91[CEU][hapmap];0.92[CHB][hapmap]
rs7072332	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7073678	0.87[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap]
rs7080683	0.91[CEU][hapmap];0.92[CHB][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap]
rs7081730	0.91[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs7087057	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs7087862	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7092744	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7093540	0.83[CEU][hapmap]
rs7093889	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs7094733	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7099755	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.96[TSI][hapmap];0.92[YRI][hapmap]
rs7099893	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap]
rs721825	0.91[CEU][hapmap];0.85[CHB][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap]
rs7897570	0.85[CHB][hapmap]
rs7912548	0.93[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs7915391	0.91[CEU][hapmap];0.85[CHB][hapmap];0.80[GIH][hapmap];0.91[MEX][hapmap]
rs7917091	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs9804198	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs9943342	0.92[CHB][hapmap]
rs996320	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv467215	chr10:55943184-56019194	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv550951	chr10:55943184-56019194	Active TSS ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2384424	MBL2	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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