Variant report

Variant	rs11004251
Chromosome Location	chr10:56111312-56111313
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10825308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10825318	0.88[ASN][1000 genomes]
rs10825324	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004201	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11004222	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11004225	1.00[CHB][hapmap]
rs11004233	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11004249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11004277	1.00[CHB][hapmap]
rs11004281	1.00[JPT][hapmap]
rs11004282	1.00[JPT][hapmap]
rs11004283	1.00[JPT][hapmap]
rs11004284	1.00[JPT][hapmap]
rs11004285	1.00[JPT][hapmap]
rs11004288	1.00[JPT][hapmap]
rs11004289	1.00[JPT][hapmap]
rs11004296	1.00[JPT][hapmap]
rs11593951	1.00[YRI][hapmap]
rs12146349	1.00[JPT][hapmap]
rs12146398	1.00[JPT][hapmap]
rs12356885	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12357807	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12358760	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12358864	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12762518	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12764585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12768342	1.00[JPT][hapmap]
rs12768441	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12770667	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12780283	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12781673	1.00[JPT][hapmap]
rs1758826	1.00[JPT][hapmap]
rs17728345	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1888972	1.00[JPT][hapmap]
rs1888973	1.00[JPT][hapmap]
rs2096174	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2151078	1.00[JPT][hapmap]
rs2183973	1.00[JPT][hapmap]
rs2185748	1.00[JPT][hapmap]
rs2384455	1.00[JPT][hapmap]
rs2891523	1.00[JPT][hapmap]
rs34848756	0.84[ASN][1000 genomes]
rs34876753	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4935107	1.00[JPT][hapmap]
rs4935108	1.00[JPT][hapmap]
rs4935520	1.00[JPT][hapmap]
rs7070060	1.00[JPT][hapmap]
rs7896552	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7901367	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7908639	1.00[JPT][hapmap]
rs7915792	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7916907	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv895434	chr10:56076004-56119975	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
9	nsv895436	chr10:56076975-56114857	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
10	nsv895437	chr10:56083891-56132046	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv895438	chr10:56083891-56146761	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
12	nsv550953	chr10:56084933-56126202	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv467218	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv550954	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
15	nsv550955	chr10:56084933-56146761	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
16	nsv895439	chr10:56084933-56146761	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
17	nsv467219	chr10:56087423-56126202	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
18	nsv550956	chr10:56087423-56126202	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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