Variant report

Variant	rs11004201
Chromosome Location	chr10:56040128-56040129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10763101	0.83[EUR][1000 genomes]
rs10825308	1.00[CHB][hapmap]
rs10825313	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10825315	1.00[CHB][hapmap]
rs10825324	1.00[CHB][hapmap]
rs11004211	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11004212	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11004214	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11004222	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11004225	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004233	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11004249	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11004251	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11004255	1.00[CHB][hapmap]
rs11004277	1.00[CHB][hapmap]
rs11004289	1.00[CHB][hapmap]
rs11593951	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12356885	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12357807	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12358760	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12358864	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12762518	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12764585	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12768441	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12770667	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12775251	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12780283	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17728345	1.00[CHB][hapmap]
rs2044000	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2096174	0.83[EUR][1000 genomes]
rs2384454	1.00[CHB][hapmap]
rs7896552	1.00[CHB][hapmap]
rs7898758	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7901367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7915792	1.00[CHB][hapmap]
rs978841	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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