Variant report

Variant	rs12257502
Chromosome Location	chr10:18755081-18755082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10828779	0.86[CHB][hapmap]
rs1409205	1.00[CEU][hapmap]
rs1570937	1.00[CEU][hapmap]
rs16917367	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs16917369	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes]
rs16917375	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv12968	chr10:18747626-18761494	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760102	chr10:18749345-18762948	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv517404	chr10:18754495-18760635	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18739000-18761000	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:18741600-18763200	Weak transcription	Fetal Stomach	stomach
4	chr10:18744400-18761800	Weak transcription	Ovary	ovary
5	chr10:18745400-18763200	Weak transcription	Right Ventricle	heart
6	chr10:18745800-18761600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:18749000-18759000	Enhancers	Fetal Heart	heart
8	chr10:18751000-18760800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:18751000-18761400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:18752800-18755200	Weak transcription	Left Ventricle	heart
11	chr10:18753000-18755200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:18753000-18775600	Weak transcription	Right Atrium	heart
13	chr10:18753600-18761800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:18754600-18756000	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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