Variant report

Variant	rs16917375
Chromosome Location	chr10:18739366-18739367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10828779	1.00[CHB][hapmap]
rs11014049	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11014166	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257502	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[EUR][1000 genomes]
rs1409205	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs1570937	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs16917357	1.00[ASN][1000 genomes]
rs16917367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069531	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7905730	1.00[YRI][hapmap]
rs9943388	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732000-18744200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
3	chr10:18738400-18739400	Flanking Active TSS	Fetal Heart	heart
4	chr10:18738800-18739400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:18739000-18741400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:18739000-18741800	Weak transcription	Placenta	Placenta
7	chr10:18739000-18744000	Weak transcription	Ovary	ovary
8	chr10:18739000-18744800	Weak transcription	Right Ventricle	heart
9	chr10:18739000-18752600	Weak transcription	Right Atrium	heart
10	chr10:18739000-18761000	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:18739200-18739600	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links