Variant report

Variant	rs7069531
Chromosome Location	chr10:18683267-18683268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10828666	0.85[ASN][1000 genomes]
rs10828779	0.86[CHB][hapmap]
rs11014016	0.91[ASN][1000 genomes]
rs11014021	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014049	0.88[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11014166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12358055	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16917367	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16917369	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16917375	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17613287	0.82[CHB][hapmap]
rs6482384	0.95[ASN][1000 genomes]
rs66677106	0.87[ASN][1000 genomes]
rs67117524	0.89[ASN][1000 genomes]
rs7091067	0.81[ASN][1000 genomes]
rs976785	0.85[ASN][1000 genomes]
rs998229	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv550041	chr10:18671921-18686452	Enhancers Weak transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7069531	C10orf113	cis	cerebellum	SCAN
rs7069531	TRDMT1	cis	parietal	SCAN
rs7069531	NMT2	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:18669000-18689400	Weak transcription	Left Ventricle	heart
3	chr10:18679400-18689200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:18680400-18683400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:18682600-18684200	Enhancers	Colon Smooth Muscle	Colon
6	chr10:18682800-18689000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:18683200-18684000	Enhancers	Brain Anterior Caudate	brain
8	chr10:18683200-18684800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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