Variant report

Variant	rs10828666
Chromosome Location	chr10:18704124-18704125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10828689	0.90[ASN][1000 genomes]
rs11014016	0.81[ASN][1000 genomes]
rs11014021	0.87[ASN][1000 genomes]
rs11014049	0.89[ASN][1000 genomes]
rs11014166	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11014171	0.89[EUR][1000 genomes]
rs17613287	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1813353	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4548524	0.84[EUR][1000 genomes]
rs6482384	0.89[ASN][1000 genomes]
rs6482423	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66677106	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67117524	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67744136	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7069531	0.85[ASN][1000 genomes]
rs7091067	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7897101	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs976785	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998229	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
2	chr10:18690200-18713000	Weak transcription	Ovary	ovary
3	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:18701000-18705800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:18702800-18707600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:18703000-18704200	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:18703000-18705400	Weak transcription	Right Ventricle	heart
9	chr10:18703200-18711200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:18703600-18707000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:18703600-18707000	Weak transcription	Left Ventricle	heart
12	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
13	chr10:18703800-18704800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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