Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18706370..18708448-chr10:18711471..18713680,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10828666	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11014166	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014171	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014193	0.86[JPT][hapmap]
rs11813051	1.00[JPT][hapmap]
rs11815316	1.00[JPT][hapmap]
rs12258178	1.00[JPT][hapmap]
rs12258967	0.86[CEU][hapmap]
rs12772024	1.00[JPT][hapmap]
rs16917257	1.00[JPT][hapmap]
rs16917288	1.00[JPT][hapmap]
rs16917309	1.00[JPT][hapmap]
rs16917315	1.00[JPT][hapmap]
rs16917320	1.00[JPT][hapmap]
rs16917323	1.00[JPT][hapmap]
rs17613287	0.87[EUR][1000 genomes]
rs4548524	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs6482423	0.87[EUR][1000 genomes]
rs66677106	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67117524	0.80[EUR][1000 genomes]
rs67744136	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7075571	1.00[JPT][hapmap]
rs7091067	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7897101	0.87[EUR][1000 genomes]
rs912985	1.00[JPT][hapmap]
rs976785	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs998229	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690200-18713000	Weak transcription	Ovary	ovary
2	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
4	chr10:18702800-18707600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:18703200-18711200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
7	chr10:18707200-18707600	Weak transcription	Left Ventricle	heart
8	chr10:18707200-18708200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:18707200-18708800	Enhancers	Fetal Heart	heart
10	chr10:18707400-18707600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:18707400-18707800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:18707400-18707800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:18707400-18708000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:18707400-18708200	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:18707400-18708600	Enhancers	Primary monocytes fromperipheralblood	blood

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