Variant report

Variant	rs12258967
Chromosome Location	chr10:18727959-18727960
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11014166	0.80[CEU][hapmap]
rs11014171	0.83[CEU][hapmap]
rs1813353	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Blood pressure	21909110	GWAS catalog

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
2	chr10:18719000-18730000	Weak transcription	Aorta	Aorta
3	chr10:18724800-18738600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:18726000-18730000	Enhancers	Fetal Heart	heart
5	chr10:18727200-18728200	Enhancers	Fetal Brain Male	brain
6	chr10:18727400-18728200	Enhancers	Brain Angular Gyrus	brain
7	chr10:18727600-18729400	Weak transcription	Left Ventricle	heart
8	chr10:18727800-18728400	Enhancers	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links