Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10828666	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10828689	0.90[ASN][1000 genomes]
rs10828779	0.86[CHB][hapmap]
rs11014021	0.83[ASN][1000 genomes]
rs11014049	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11014171	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12258967	0.80[CEU][hapmap]
rs16917367	0.85[CHB][hapmap]
rs16917369	0.86[CHB][hapmap]
rs16917375	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17613287	0.82[CHB][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1813353	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4548524	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs6482384	0.81[ASN][1000 genomes]
rs6482423	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66677106	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67117524	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67744136	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7069531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7091067	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7897101	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs976785	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs998229	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

Variant related diseases (count:3)

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690200-18713000	Weak transcription	Ovary	ovary
2	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:18703200-18711200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
5	chr10:18707200-18708800	Enhancers	Fetal Heart	heart
6	chr10:18707800-18713000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:18707800-18713000	Weak transcription	Left Ventricle	heart
8	chr10:18708000-18713000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:18708000-18713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:18708200-18710400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:18708200-18712200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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