Variant report

Variant	rs67117524
Chromosome Location	chr10:18698640-18698641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10828666	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828689	0.90[ASN][1000 genomes]
rs11014016	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014021	0.91[ASN][1000 genomes]
rs11014049	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014166	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17613287	0.90[ASN][1000 genomes]
rs1813353	0.80[EUR][1000 genomes]
rs6482384	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6482423	0.85[ASN][1000 genomes]
rs66677106	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069531	0.89[ASN][1000 genomes]
rs7091067	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7897101	0.84[ASN][1000 genomes]
rs976785	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs998229	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
2	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
3	chr10:18690200-18713000	Weak transcription	Ovary	ovary
4	chr10:18690600-18702800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18691000-18702600	Weak transcription	Pancreas	Pancrea
6	chr10:18692000-18702600	Weak transcription	Liver	Liver
7	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:18692400-18703000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:18692600-18702800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
11	chr10:18695400-18699400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:18696400-18702800	Weak transcription	Right Ventricle	heart
13	chr10:18697400-18699000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:18698000-18699200	Enhancers	Left Ventricle	heart
15	chr10:18698400-18698800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:18698400-18699200	Genic enhancers	Fetal Heart	heart
17	chr10:18698600-18699000	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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