Variant report

Variant	rs10828689
Chromosome Location	chr10:18721957-18721958
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10828666	0.90[ASN][1000 genomes]
rs11014021	0.81[ASN][1000 genomes]
rs11014166	0.90[ASN][1000 genomes]
rs17613287	1.00[ASN][1000 genomes]
rs6482423	0.96[ASN][1000 genomes]
rs66677106	0.87[ASN][1000 genomes]
rs67117524	0.90[ASN][1000 genomes]
rs7091067	0.98[ASN][1000 genomes]
rs7897101	0.94[ASN][1000 genomes]
rs976785	0.90[ASN][1000 genomes]
rs998229	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
2	chr10:18713400-18727200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:18719000-18730000	Weak transcription	Aorta	Aorta
4	chr10:18721400-18723000	Enhancers	Fetal Heart	heart
5	chr10:18721800-18723800	Weak transcription	Left Ventricle	heart
6	chr10:18721800-18724000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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