Variant report

Variant	rs4548524
Chromosome Location	chr10:18716867-18716868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10828666	0.84[EUR][1000 genomes]
rs11014166	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs11014171	0.87[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17613287	0.81[EUR][1000 genomes]
rs1813353	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs6482423	0.81[EUR][1000 genomes]
rs66677106	0.84[EUR][1000 genomes]
rs67744136	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7091067	0.84[EUR][1000 genomes]
rs7897101	0.81[EUR][1000 genomes]
rs976785	0.82[EUR][1000 genomes]
rs998229	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4548524	RPP38	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
2	chr10:18713400-18718200	Weak transcription	Right Ventricle	heart
3	chr10:18713400-18721400	Weak transcription	Left Ventricle	heart
4	chr10:18713400-18727200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:18714600-18721000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:18715200-18718000	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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