Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11014193	0.85[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap]
rs11815316	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs12258178	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs12262789	0.96[ASN][1000 genomes]
rs12772024	1.00[JPT][hapmap]
rs16917257	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs16917288	1.00[JPT][hapmap]
rs16917309	1.00[JPT][hapmap]
rs16917315	1.00[JPT][hapmap]
rs16917320	1.00[JPT][hapmap]
rs16917323	1.00[JPT][hapmap]
rs16917373	0.91[LWK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs16917402	1.00[TSI][hapmap]
rs16917404	0.82[EUR][1000 genomes]
rs16917412	1.00[MEX][hapmap];0.91[EUR][1000 genomes]
rs16917418	1.00[TSI][hapmap]
rs1813353	1.00[JPT][hapmap]
rs4748473	0.91[EUR][1000 genomes]
rs59368188	0.82[EUR][1000 genomes]
rs61141526	0.82[AFR][1000 genomes]
rs7075571	1.00[JPT][hapmap]
rs73605725	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74121221	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74121223	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs912985	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732000-18744200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
3	chr10:18739000-18744000	Weak transcription	Ovary	ovary
4	chr10:18739000-18744800	Weak transcription	Right Ventricle	heart
5	chr10:18739000-18752600	Weak transcription	Right Atrium	heart
6	chr10:18739000-18761000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:18739800-18745400	Weak transcription	Left Ventricle	heart
8	chr10:18740600-18744200	Enhancers	Fetal Heart	heart
9	chr10:18741600-18763200	Weak transcription	Fetal Stomach	stomach
10	chr10:18742000-18745000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:18742200-18743400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:18743000-18743800	Weak transcription	Placenta	Placenta

Quick Search: