Variant report

Variant	rs74121223
Chromosome Location	chr10:18732302-18732303
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11813051	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12262789	0.96[ASN][1000 genomes]
rs16917404	0.82[EUR][1000 genomes]
rs16917412	0.91[EUR][1000 genomes]
rs4748473	0.91[EUR][1000 genomes]
rs59368188	0.82[EUR][1000 genomes]
rs73605725	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74121221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121226	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18724800-18738600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:18728400-18734200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:18730000-18738600	Weak transcription	Ovary	ovary
4	chr10:18730200-18738000	Weak transcription	Left Ventricle	heart
5	chr10:18732000-18732400	Genic enhancers	Pancreas	Pancrea
6	chr10:18732000-18732600	Enhancers	Fetal Heart	heart
7	chr10:18732000-18744200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:18732200-18732400	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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