Variant report

Variant	rs61141526
Chromosome Location	chr10:18738795-18738796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11813051	0.82[AFR][1000 genomes]
rs1575834	1.00[EUR][1000 genomes]
rs1575837	1.00[EUR][1000 genomes]
rs16917373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121226	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121231	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732000-18744200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
3	chr10:18734200-18738800	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:18738000-18739200	Enhancers	Left Ventricle	heart
5	chr10:18738400-18739000	Enhancers	Right Ventricle	heart
6	chr10:18738400-18739400	Flanking Active TSS	Fetal Heart	heart
7	chr10:18738600-18738800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:18738600-18739000	Enhancers	Brain Anterior Caudate	brain
9	chr10:18738600-18739000	Enhancers	Fetal Muscle Leg	muscle
10	chr10:18738600-18739000	Enhancers	Ovary	ovary
11	chr10:18738600-18739000	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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