Variant report

Variant	rs16917257
Chromosome Location	chr10:18683293-18683294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11014036	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014193	0.93[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.91[EUR][1000 genomes]
rs11812630	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11813051	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs11815316	1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12258178	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12772024	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16917288	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16917309	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16917315	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16917320	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16917323	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16917341	0.81[AMR][1000 genomes]
rs16917412	1.00[MEX][hapmap]
rs1813353	1.00[JPT][hapmap]
rs55988124	1.00[EUR][1000 genomes]
rs57285503	1.00[EUR][1000 genomes]
rs59167174	1.00[EUR][1000 genomes]
rs59779524	1.00[EUR][1000 genomes]
rs61368411	1.00[EUR][1000 genomes]
rs7075571	1.00[JPT][hapmap]
rs74117987	1.00[EUR][1000 genomes]
rs74117988	1.00[EUR][1000 genomes]
rs74117989	1.00[EUR][1000 genomes]
rs912985	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv550041	chr10:18671921-18686452	Enhancers Weak transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:18669000-18689400	Weak transcription	Left Ventricle	heart
3	chr10:18679400-18689200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:18680400-18683400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:18682600-18684200	Enhancers	Colon Smooth Muscle	Colon
6	chr10:18682800-18689000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:18683200-18684000	Enhancers	Brain Anterior Caudate	brain
8	chr10:18683200-18684800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links