Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11014193	0.91[EUR][1000 genomes]
rs11812630	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11815316	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12250187	0.87[AFR][1000 genomes]
rs12258178	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261017	0.86[AFR][1000 genomes]
rs12772024	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16917257	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16917288	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16917309	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16917315	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16917320	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16917323	0.91[EUR][1000 genomes]
rs55988124	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57285503	1.00[EUR][1000 genomes]
rs59167174	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59779524	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61368411	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7075571	0.80[ASN][1000 genomes]
rs74117987	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74117988	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74117989	1.00[EUR][1000 genomes]
rs912985	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550041	chr10:18671921-18686452	Enhancers Weak transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18669000-18689400	Weak transcription	Left Ventricle	heart
2	chr10:18679400-18689200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:18682800-18689000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:18684000-18689000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:18684000-18689200	Weak transcription	Brain Anterior Caudate	brain
6	chr10:18684200-18689000	Weak transcription	Fetal Kidney	kidney
7	chr10:18684200-18689000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:18684400-18689200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:18684800-18686800	Weak transcription	Fetal Heart	heart

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