Variant report

Variant	rs11812630
Chromosome Location	chr10:18701836-18701837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11014036	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014193	0.91[EUR][1000 genomes]
rs11813702	0.92[AFR][1000 genomes]
rs11815316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258178	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12772024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917257	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16917288	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16917309	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917315	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16917320	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16917323	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16917341	0.92[ASN][1000 genomes]
rs55988124	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57285503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59167174	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59779524	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61368411	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7075571	0.97[ASN][1000 genomes]
rs74117987	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74117988	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74117989	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs912985	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
2	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
3	chr10:18690200-18713000	Weak transcription	Ovary	ovary
4	chr10:18690600-18702800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18691000-18702600	Weak transcription	Pancreas	Pancrea
6	chr10:18692000-18702600	Weak transcription	Liver	Liver
7	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:18692400-18703000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:18692600-18702800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
11	chr10:18696400-18702800	Weak transcription	Right Ventricle	heart
12	chr10:18699000-18703000	Weak transcription	Fetal Intestine Large	intestine
13	chr10:18700000-18703600	Enhancers	Fetal Heart	heart
14	chr10:18700600-18703000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:18701000-18702800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:18701000-18705800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr10:18701200-18702800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:18701200-18702800	Weak transcription	Left Ventricle	heart
19	chr10:18701200-18702800	Weak transcription	Lung	lung
20	chr10:18701800-18702800	Weak transcription	Colon Smooth Muscle	Colon

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