Variant report

Variant	rs16917320
Chromosome Location	chr10:18704550-18704551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18702337..18704574-chr10:18724311..18726686,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11014036	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014193	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs11812630	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11813051	1.00[JPT][hapmap]
rs11815316	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11818244	0.84[ASN][1000 genomes]
rs12258178	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12772024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16917257	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16917288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16917309	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16917315	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917323	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16917341	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16917412	0.81[EUR][1000 genomes]
rs1813353	1.00[JPT][hapmap]
rs4748473	0.81[EUR][1000 genomes]
rs55988124	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57285503	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59167174	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59261128	0.84[ASN][1000 genomes]
rs59515030	0.84[ASN][1000 genomes]
rs59779524	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61368411	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6482444	0.84[ASN][1000 genomes]
rs7075571	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs74117987	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74117988	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74117989	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs912985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
2	chr10:18690200-18713000	Weak transcription	Ovary	ovary
3	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:18701000-18705800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:18702800-18707600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:18703000-18705400	Weak transcription	Right Ventricle	heart
8	chr10:18703200-18711200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:18703600-18707000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:18703600-18707000	Weak transcription	Left Ventricle	heart
11	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
12	chr10:18703800-18704800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links