Variant report

Variant	rs59261128
Chromosome Location	chr10:18729432-18729433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11818244	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917288	0.82[ASN][1000 genomes]
rs16917315	0.84[ASN][1000 genomes]
rs16917320	0.84[ASN][1000 genomes]
rs16917323	0.87[ASN][1000 genomes]
rs16917341	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55988124	0.82[ASN][1000 genomes]
rs59167174	0.82[ASN][1000 genomes]
rs59515030	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59779524	0.82[ASN][1000 genomes]
rs61368411	0.82[ASN][1000 genomes]
rs6482444	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075571	0.82[ASN][1000 genomes]
rs74117987	0.82[ASN][1000 genomes]
rs74117988	0.82[ASN][1000 genomes]
rs912985	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3388668	chr10:18729402-18729628	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
2	chr10:18719000-18730000	Weak transcription	Aorta	Aorta
3	chr10:18724800-18738600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:18726000-18730000	Enhancers	Fetal Heart	heart
5	chr10:18728400-18734200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:18729400-18730200	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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