Variant report

Variant	rs59779524
Chromosome Location	chr10:18699259-18699260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18688539..18692004-chr10:18698715..18701729,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165995	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11014036	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11014193	0.91[EUR][1000 genomes]
rs11812630	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11815316	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11818244	0.82[ASN][1000 genomes]
rs12258178	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12772024	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16917257	1.00[EUR][1000 genomes]
rs16917288	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917309	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16917315	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16917320	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16917323	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16917341	0.95[ASN][1000 genomes]
rs55988124	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57285503	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59167174	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59261128	0.82[ASN][1000 genomes]
rs59515030	0.82[ASN][1000 genomes]
rs61368411	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482444	0.82[ASN][1000 genomes]
rs7075571	1.00[ASN][1000 genomes]
rs74117987	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74117988	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74117989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs912985	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
2	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
3	chr10:18690200-18713000	Weak transcription	Ovary	ovary
4	chr10:18690600-18702800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18691000-18702600	Weak transcription	Pancreas	Pancrea
6	chr10:18692000-18702600	Weak transcription	Liver	Liver
7	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:18692400-18703000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:18692600-18702800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
11	chr10:18695400-18699400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:18696400-18702800	Weak transcription	Right Ventricle	heart
13	chr10:18698800-18699600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:18699000-18700600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:18699000-18703000	Weak transcription	Fetal Intestine Large	intestine
16	chr10:18699200-18699600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:18699200-18700000	Weak transcription	Fetal Heart	heart
18	chr10:18699200-18700400	Weak transcription	Left Ventricle	heart
19	chr10:18699200-18700400	Weak transcription	Rectal Smooth Muscle	rectum

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