Variant report

Variant	rs12257629
Chromosome Location	chr10:38671051-38671052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11011492	1.00[EUR][1000 genomes]
rs11011493	1.00[EUR][1000 genomes]
rs11011582	1.00[AMR][1000 genomes]
rs11498331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11498337	1.00[AMR][1000 genomes]
rs12240841	1.00[EUR][1000 genomes]
rs12242023	1.00[AMR][1000 genomes]
rs12242170	1.00[AMR][1000 genomes]
rs12244101	1.00[AMR][1000 genomes]
rs12247862	1.00[AMR][1000 genomes]
rs12250039	1.00[AMR][1000 genomes]
rs12252556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12259006	1.00[AMR][1000 genomes]
rs12261622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264035	1.00[AMR][1000 genomes]
rs28886590	1.00[AMR][1000 genomes]
rs34453975	1.00[AMR][1000 genomes]
rs35427829	1.00[AMR][1000 genomes]
rs35769459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59353999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71235515	1.00[AMR][1000 genomes]
rs71494838	1.00[EUR][1000 genomes]
rs71498883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71500421	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv33710	chr10:38545898-38671289	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv427860	chr10:38588021-38818835	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv895034	chr10:38632352-38743545	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv947859	chr10:38633447-38674546	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2764202	chr10:38641508-39076221	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1048953	chr10:38645824-39074038	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv428230	chr10:38652001-38818835	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv540567	chr10:38666856-38676001	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv540568	chr10:38666856-38684802	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38660600-38671600	Weak transcription	HepG2	liver
2	chr10:38661000-38683400	Weak transcription	Brain Substantia Nigra	brain
3	chr10:38661200-38680400	Weak transcription	GM12878-XiMat	blood
4	chr10:38666800-38676000	Weak transcription	Dnd41	blood
5	chr10:38668000-38674200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:38668200-38675000	Weak transcription	Lung	lung

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