Variant report

Variant	rs71494838
Chromosome Location	chr10:38540846-38540847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11011429	1.00[AMR][1000 genomes]
rs11011492	1.00[EUR][1000 genomes]
rs11011493	1.00[EUR][1000 genomes]
rs11498331	1.00[EUR][1000 genomes]
rs12240841	1.00[EUR][1000 genomes]
rs12245586	1.00[AMR][1000 genomes]
rs12252556	1.00[EUR][1000 genomes]
rs12253640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12257173	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12257629	1.00[EUR][1000 genomes]
rs12261622	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12771655	1.00[AFR][1000 genomes]
rs2023432	1.00[AMR][1000 genomes]
rs34579247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35769459	1.00[EUR][1000 genomes]
rs59353999	1.00[EUR][1000 genomes]
rs7100316	0.83[EUR][1000 genomes]
rs71491235	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71491240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71491244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71498883	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv947858	chr10:38516576-38632253	ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38540600-38541000	Active TSS	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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