Variant report

Variant	rs71491240
Chromosome Location	chr10:38417651-38417652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11011429	1.00[AMR][1000 genomes]
rs11011445	1.00[EUR][1000 genomes]
rs11011447	1.00[EUR][1000 genomes]
rs11011448	1.00[EUR][1000 genomes]
rs11011454	1.00[EUR][1000 genomes]
rs11011455	1.00[EUR][1000 genomes]
rs11011456	1.00[EUR][1000 genomes]
rs11011457	1.00[EUR][1000 genomes]
rs12243715	1.00[EUR][1000 genomes]
rs12244439	1.00[EUR][1000 genomes]
rs12244661	1.00[EUR][1000 genomes]
rs12245586	1.00[AMR][1000 genomes]
rs12245792	1.00[EUR][1000 genomes]
rs12246341	1.00[EUR][1000 genomes]
rs12246875	1.00[EUR][1000 genomes]
rs12247832	1.00[EUR][1000 genomes]
rs12248050	1.00[EUR][1000 genomes]
rs12250395	1.00[AMR][1000 genomes]
rs12253640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254726	1.00[EUR][1000 genomes]
rs12257173	1.00[AFR][1000 genomes]
rs12258247	0.83[EUR][1000 genomes]
rs12258703	1.00[EUR][1000 genomes]
rs12260877	1.00[EUR][1000 genomes]
rs12261570	1.00[EUR][1000 genomes]
rs12266231	1.00[EUR][1000 genomes]
rs12266460	1.00[EUR][1000 genomes]
rs12268280	1.00[EUR][1000 genomes]
rs12771655	1.00[AFR][1000 genomes]
rs12775500	1.00[EUR][1000 genomes]
rs12782054	1.00[EUR][1000 genomes]
rs12784488	1.00[EUR][1000 genomes]
rs16937701	1.00[EUR][1000 genomes]
rs2023432	1.00[AMR][1000 genomes]
rs28448364	1.00[EUR][1000 genomes]
rs28607758	1.00[EUR][1000 genomes]
rs28719516	1.00[EUR][1000 genomes]
rs34067956	1.00[EUR][1000 genomes]
rs34522767	1.00[EUR][1000 genomes]
rs34571803	1.00[EUR][1000 genomes]
rs34579247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34759610	1.00[EUR][1000 genomes]
rs34908048	1.00[EUR][1000 genomes]
rs34918037	1.00[AMR][1000 genomes]
rs35246660	1.00[AMR][1000 genomes]
rs36010363	1.00[EUR][1000 genomes]
rs36043070	1.00[EUR][1000 genomes]
rs36091737	1.00[EUR][1000 genomes]
rs36114117	1.00[EUR][1000 genomes]
rs58217854	1.00[EUR][1000 genomes]
rs7095460	1.00[EUR][1000 genomes]
rs7100316	0.83[EUR][1000 genomes]
rs71491227	1.00[AMR][1000 genomes]
rs71491235	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71491237	1.00[EUR][1000 genomes]
rs71491238	1.00[EUR][1000 genomes]
rs71491239	1.00[EUR][1000 genomes]
rs71491244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7895219	1.00[EUR][1000 genomes]
rs7900878	1.00[EUR][1000 genomes]
rs7901183	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv6465	chr10:38377662-38422125	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv895031	chr10:38402789-38464886	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38413400-38420400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:38415800-38429400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:38417400-38419600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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