Variant report

Variant	rs36043070
Chromosome Location	chr10:38392831-38392832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11011445	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11011447	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11011448	1.00[EUR][1000 genomes]
rs11011454	1.00[EUR][1000 genomes]
rs11011455	1.00[EUR][1000 genomes]
rs11011456	1.00[EUR][1000 genomes]
rs11011457	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11011492	0.85[AMR][1000 genomes]
rs11011493	0.85[AMR][1000 genomes]
rs12240841	0.85[AMR][1000 genomes]
rs12243715	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12244439	1.00[EUR][1000 genomes]
rs12244661	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245792	1.00[EUR][1000 genomes]
rs12246341	1.00[EUR][1000 genomes]
rs12246875	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247832	1.00[EUR][1000 genomes]
rs12248050	1.00[EUR][1000 genomes]
rs12253640	1.00[EUR][1000 genomes]
rs12254726	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258247	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12258703	1.00[EUR][1000 genomes]
rs12260877	1.00[EUR][1000 genomes]
rs12261570	1.00[EUR][1000 genomes]
rs12266231	1.00[EUR][1000 genomes]
rs12266460	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12268280	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12775500	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12782054	1.00[EUR][1000 genomes]
rs12784488	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16937701	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28448364	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28607758	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28719516	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34067956	1.00[EUR][1000 genomes]
rs34522767	1.00[EUR][1000 genomes]
rs34571803	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34579247	1.00[EUR][1000 genomes]
rs34759610	1.00[EUR][1000 genomes]
rs34908048	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36010363	1.00[EUR][1000 genomes]
rs36091737	1.00[EUR][1000 genomes]
rs36114117	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58217854	1.00[EUR][1000 genomes]
rs7095460	1.00[EUR][1000 genomes]
rs7100316	0.83[EUR][1000 genomes]
rs71491235	1.00[EUR][1000 genomes]
rs71491237	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71491238	1.00[EUR][1000 genomes]
rs71491239	1.00[EUR][1000 genomes]
rs71491240	1.00[EUR][1000 genomes]
rs71491244	1.00[EUR][1000 genomes]
rs7895219	1.00[EUR][1000 genomes]
rs7900878	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7901183	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv6465	chr10:38377662-38422125	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38384400-38396400	Weak transcription	HUVEC	blood vessel
2	chr10:38385400-38394400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:38385600-38396200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:38386000-38395200	Weak transcription	Hela-S3	cervix
5	chr10:38386200-38396000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr10:38386400-38393000	Weak transcription	Right Ventricle	heart
7	chr10:38386800-38395800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:38386800-38396200	ZNF genes & repeats	Fetal Brain Female	brain
9	chr10:38386800-38396200	ZNF genes & repeats	Fetal Lung	lung
10	chr10:38387600-38398800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:38387800-38396800	ZNF genes & repeats	Liver	Liver
12	chr10:38388000-38393000	Weak transcription	Placenta	Placenta
13	chr10:38388200-38396200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:38388200-38399200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr10:38388600-38394800	Weak transcription	NHDF-Ad	bronchial
16	chr10:38388600-38397600	Weak transcription	NH-A	brain
17	chr10:38389200-38395800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
18	chr10:38389200-38396000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
19	chr10:38389600-38393200	Weak transcription	Fetal Thymus	thymus
20	chr10:38389600-38395800	ZNF genes & repeats	Dnd41	blood
21	chr10:38389800-38393800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
22	chr10:38390000-38395800	ZNF genes & repeats	Adipose Nuclei	Adipose
23	chr10:38390400-38393800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
24	chr10:38390600-38394000	ZNF genes & repeats	Fetal Intestine Large	intestine
25	chr10:38390600-38395600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
26	chr10:38390600-38396000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr10:38390800-38393000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
28	chr10:38390800-38393200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:38390800-38393800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:38390800-38395600	ZNF genes & repeats	Colon Smooth Muscle	Colon
31	chr10:38391000-38393800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
32	chr10:38391000-38393800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:38391000-38395600	ZNF genes & repeats	A549	lung
34	chr10:38391000-38396000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:38391000-38396200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:38391200-38393400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
37	chr10:38391200-38393600	ZNF genes & repeats	Brain Anterior Caudate	brain
38	chr10:38391200-38393600	ZNF genes & repeats	Brain Substantia Nigra	brain
39	chr10:38391200-38393800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
40	chr10:38391200-38393800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
41	chr10:38391200-38395000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:38391200-38395600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
43	chr10:38391200-38395600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
44	chr10:38391200-38396000	ZNF genes & repeats	Fetal Kidney	kidney
45	chr10:38391200-38396400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
46	chr10:38391400-38393200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
47	chr10:38391400-38393200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:38391400-38393400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
49	chr10:38391600-38393000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:38391600-38393600	ZNF genes & repeats	GM12878-XiMat	blood

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