Variant report
Variant | rs12244661 |
---|---|
Chromosome Location | chr10:38414689-38414690 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:38414466..38417303-chr10:38420276..38421932,4 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11011445 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11011447 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11011448 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11011454 | 1.00[EUR][1000 genomes] |
rs11011455 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11011456 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11011457 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11011492 | 1.00[AMR][1000 genomes] |
rs11011493 | 1.00[AMR][1000 genomes] |
rs12240841 | 1.00[AMR][1000 genomes] |
rs12243715 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12244294 | 0.94[AFR][1000 genomes] |
rs12244439 | 0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12245632 | 0.94[AFR][1000 genomes] |
rs12245792 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12246341 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12246875 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12247832 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12248050 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12253640 | 1.00[EUR][1000 genomes] |
rs12254726 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12258247 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs12258703 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12260759 | 0.88[AFR][1000 genomes] |
rs12260877 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12261570 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12266231 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12266460 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12268280 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12772607 | 0.94[AFR][1000 genomes] |
rs12775500 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12782054 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12784488 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16905726 | 0.94[AFR][1000 genomes] |
rs16937696 | 0.94[AFR][1000 genomes] |
rs16937701 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28448364 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28607758 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28719516 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34067956 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34522767 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34571803 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34579247 | 1.00[EUR][1000 genomes] |
rs34759610 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34908048 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs36010363 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs36043070 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs36091737 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs36114117 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58217854 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7086341 | 0.86[AFR][1000 genomes] |
rs7095460 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7100316 | 0.83[EUR][1000 genomes] |
rs71491235 | 1.00[EUR][1000 genomes] |
rs71491237 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71491238 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs71491239 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71491240 | 1.00[EUR][1000 genomes] |
rs71491241 | 0.86[AFR][1000 genomes] |
rs71491244 | 1.00[EUR][1000 genomes] |
rs7895219 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7900878 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7901183 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv895030 | chr10:37715737-38674609 | Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
2 | nsv1045684 | chr10:37765361-38426204 | Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
3 | nsv540564 | chr10:37765361-38426204 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
4 | nsv1040704 | chr10:37940024-38451917 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
5 | nsv1051121 | chr10:38155991-38426204 | Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
6 | nsv540565 | chr10:38155991-38426204 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
7 | nsv540566 | chr10:38301001-38680127 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
8 | nsv550419 | chr10:38311777-38501654 | Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
9 | nsv6465 | chr10:38377662-38422125 | Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
10 | nsv895031 | chr10:38402789-38464886 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:38400600-38416600 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
2 | chr10:38400800-38415000 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
3 | chr10:38413400-38420400 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
4 | chr10:38414600-38415000 | ZNF genes & repeats | Brain Germinal Matrix | brain |
5 | chr10:38414600-38417400 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |