Variant report

Variant	rs7086341
Chromosome Location	chr10:38410865-38410866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38410646..38413277-chr10:38415685..38417235,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11011445	0.86[AFR][1000 genomes]
rs11011447	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11011448	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11011455	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11011456	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11011457	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11011492	1.00[ASN][1000 genomes]
rs11817782	1.00[CHB][hapmap]
rs12240841	1.00[ASN][1000 genomes]
rs12243715	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12244294	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244439	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12244661	0.86[AFR][1000 genomes]
rs12245632	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12245792	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12246341	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12246875	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12247832	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12248050	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12248947	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12254726	1.00[ASN][1000 genomes]
rs12258247	0.81[AFR][1000 genomes]
rs12258703	1.00[ASN][1000 genomes]
rs12258848	0.92[AFR][1000 genomes]
rs12260759	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12260877	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12261570	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12266231	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12266460	0.86[AFR][1000 genomes]
rs12268280	0.86[AFR][1000 genomes]
rs12268465	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772607	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775500	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12782054	0.97[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12784488	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16905726	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16937696	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16937701	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17587699	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17587939	0.91[EUR][1000 genomes]
rs17588142	0.88[EUR][1000 genomes]
rs17664698	0.91[EUR][1000 genomes]
rs2178961	0.91[EUR][1000 genomes]
rs28448364	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28607758	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28719516	0.86[AFR][1000 genomes]
rs3207878	0.86[EUR][1000 genomes]
rs34067956	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34522767	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34571803	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34759610	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34908048	1.00[ASN][1000 genomes]
rs36010363	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs36091737	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs36114117	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58217854	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7085204	0.91[EUR][1000 genomes]
rs7095460	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7100316	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs71491237	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71491238	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71491239	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs71491241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895219	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7897675	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7900878	0.86[AFR][1000 genomes]
rs7901183	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7903054	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv6465	chr10:38377662-38422125	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv895031	chr10:38402789-38464886	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38400600-38416600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr10:38400800-38415000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:38401000-38411200	ZNF genes & repeats	Dnd41	blood
4	chr10:38401000-38411400	ZNF genes & repeats	Brain Hippocampus Middle	brain
5	chr10:38401200-38411200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:38401800-38411200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:38401800-38413800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38402000-38412800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr10:38402200-38411000	ZNF genes & repeats	Fetal Brain Female	brain
10	chr10:38402200-38411200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:38402200-38413200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr10:38402200-38413200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:38402200-38413400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:38402200-38413400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
15	chr10:38402200-38413600	ZNF genes & repeats	Liver	Liver
16	chr10:38402400-38411000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:38402400-38411200	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr10:38402400-38411200	ZNF genes & repeats	Colon Smooth Muscle	Colon
19	chr10:38402400-38411400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr10:38403800-38412800	ZNF genes & repeats	Psoas Muscle	Psoas
21	chr10:38404000-38411000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:38409800-38413400	ZNF genes & repeats	Brain Germinal Matrix	brain
23	chr10:38410400-38411200	ZNF genes & repeats	Pancreas	Pancrea
24	chr10:38410800-38411200	ZNF genes & repeats	Fetal Heart	heart
25	chr10:38410800-38413200	ZNF genes & repeats	Fetal Lung	lung

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