Variant report

Variant	rs7897675
Chromosome Location	chr10:38408566-38408567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10508862	1.00[AFR][1000 genomes]
rs11593864	1.00[AFR][1000 genomes]
rs11594192	1.00[AFR][1000 genomes]
rs11594193	1.00[AFR][1000 genomes]
rs11594576	1.00[AFR][1000 genomes]
rs11595211	1.00[AFR][1000 genomes]
rs11595912	1.00[AFR][1000 genomes]
rs11595951	1.00[AFR][1000 genomes]
rs11597265	1.00[AFR][1000 genomes]
rs11597703	1.00[AFR][1000 genomes]
rs11598302	1.00[AFR][1000 genomes]
rs1208549	1.00[AFR][1000 genomes]
rs1208550	1.00[AFR][1000 genomes]
rs1208551	1.00[AFR][1000 genomes]
rs1208553	1.00[AFR][1000 genomes]
rs1208557	1.00[AFR][1000 genomes]
rs1208558	1.00[AFR][1000 genomes]
rs1208563	1.00[AFR][1000 genomes]
rs1208564	1.00[AFR][1000 genomes]
rs1208565	1.00[AFR][1000 genomes]
rs1208566	1.00[AFR][1000 genomes]
rs1208567	1.00[AFR][1000 genomes]
rs1208568	1.00[AFR][1000 genomes]
rs1208569	1.00[AFR][1000 genomes]
rs1208571	1.00[AFR][1000 genomes]
rs1208574	1.00[AFR][1000 genomes]
rs1208577	1.00[AFR][1000 genomes]
rs1208579	1.00[AFR][1000 genomes]
rs1208581	1.00[AFR][1000 genomes]
rs1208583	1.00[AFR][1000 genomes]
rs1208584	1.00[AFR][1000 genomes]
rs1208586	1.00[AFR][1000 genomes]
rs1208589	1.00[AFR][1000 genomes]
rs1208590	1.00[AFR][1000 genomes]
rs1208593	1.00[AFR][1000 genomes]
rs1208594	1.00[AFR][1000 genomes]
rs1208598	1.00[AFR][1000 genomes]
rs1208599	1.00[AFR][1000 genomes]
rs1208602	1.00[AFR][1000 genomes]
rs1208604	1.00[AFR][1000 genomes]
rs1208605	1.00[AFR][1000 genomes]
rs1208606	1.00[AFR][1000 genomes]
rs1208651	1.00[AFR][1000 genomes]
rs1208652	1.00[AFR][1000 genomes]
rs1208655	1.00[AFR][1000 genomes]
rs1208656	1.00[AFR][1000 genomes]
rs1208657	1.00[AFR][1000 genomes]
rs1210991	1.00[AFR][1000 genomes]
rs12244294	0.88[EUR][1000 genomes]
rs12245632	0.86[EUR][1000 genomes]
rs12268465	0.88[EUR][1000 genomes]
rs12772607	0.88[EUR][1000 genomes]
rs16905726	0.88[EUR][1000 genomes]
rs16937696	0.88[EUR][1000 genomes]
rs1735587	1.00[AFR][1000 genomes]
rs1735591	1.00[AFR][1000 genomes]
rs17586860	1.00[AFR][1000 genomes]
rs17587699	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17587939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17588142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17664698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779061	1.00[AFR][1000 genomes]
rs1779155	1.00[AFR][1000 genomes]
rs2026112	1.00[AFR][1000 genomes]
rs2178961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2211537	1.00[AFR][1000 genomes]
rs2472156	1.00[AFR][1000 genomes]
rs2472157	1.00[AFR][1000 genomes]
rs2472161	1.00[AFR][1000 genomes]
rs2472162	1.00[AFR][1000 genomes]
rs2472163	1.00[AFR][1000 genomes]
rs2472164	1.00[AFR][1000 genomes]
rs2472165	1.00[AFR][1000 genomes]
rs2472166	1.00[AFR][1000 genomes]
rs2472167	1.00[AFR][1000 genomes]
rs2472169	1.00[AFR][1000 genomes]
rs2474538	1.00[AFR][1000 genomes]
rs2474541	1.00[AFR][1000 genomes]
rs2474543	1.00[AFR][1000 genomes]
rs2474544	1.00[AFR][1000 genomes]
rs2474546	1.00[AFR][1000 genomes]
rs2474547	1.00[AFR][1000 genomes]
rs2474560	1.00[AFR][1000 genomes]
rs2474578	1.00[AFR][1000 genomes]
rs2480522	1.00[AFR][1000 genomes]
rs2480524	1.00[AFR][1000 genomes]
rs2504117	1.00[AFR][1000 genomes]
rs2504123	1.00[AFR][1000 genomes]
rs2504124	1.00[AFR][1000 genomes]
rs2504152	1.00[AFR][1000 genomes]
rs2504153	1.00[AFR][1000 genomes]
rs2504154	1.00[AFR][1000 genomes]
rs2505201	1.00[AFR][1000 genomes]
rs2505219	1.00[AFR][1000 genomes]
rs2505221	1.00[AFR][1000 genomes]
rs2505226	1.00[AFR][1000 genomes]
rs2505227	1.00[AFR][1000 genomes]
rs2505228	1.00[AFR][1000 genomes]
rs2505229	1.00[AFR][1000 genomes]
rs2505230	1.00[AFR][1000 genomes]
rs2505231	1.00[AFR][1000 genomes]
rs2505234	1.00[AFR][1000 genomes]
rs2505246	1.00[AFR][1000 genomes]
rs2977832	1.00[AFR][1000 genomes]
rs2983324	1.00[AFR][1000 genomes]
rs3207878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4934928	1.00[AFR][1000 genomes]
rs4934929	1.00[AFR][1000 genomes]
rs7085204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086341	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7098578	1.00[AFR][1000 genomes]
rs71491241	0.88[EUR][1000 genomes]
rs7393766	1.00[AFR][1000 genomes]
rs743100	1.00[AFR][1000 genomes]
rs7903054	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9418318	1.00[AFR][1000 genomes]
rs9418319	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv6465	chr10:38377662-38422125	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv895031	chr10:38402789-38464886	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38400600-38416600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr10:38400800-38415000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:38401000-38411200	ZNF genes & repeats	Dnd41	blood
4	chr10:38401000-38411400	ZNF genes & repeats	Brain Hippocampus Middle	brain
5	chr10:38401200-38411200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:38401800-38411200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:38401800-38413800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38402000-38409200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr10:38402000-38412800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr10:38402200-38408800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:38402200-38408800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
12	chr10:38402200-38409000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
13	chr10:38402200-38409200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:38402200-38409200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:38402200-38410000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
16	chr10:38402200-38411000	ZNF genes & repeats	Fetal Brain Female	brain
17	chr10:38402200-38411200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:38402200-38413200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
19	chr10:38402200-38413200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:38402200-38413400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:38402200-38413400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr10:38402200-38413600	ZNF genes & repeats	Liver	Liver
23	chr10:38402400-38408800	ZNF genes & repeats	HSMMtube	muscle
24	chr10:38402400-38409000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
25	chr10:38402400-38409200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:38402400-38409200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
27	chr10:38402400-38409800	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:38402400-38410000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:38402400-38411000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:38402400-38411200	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr10:38402400-38411200	ZNF genes & repeats	Colon Smooth Muscle	Colon
32	chr10:38402400-38411400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
33	chr10:38402600-38409000	ZNF genes & repeats	HSMM	muscle
34	chr10:38402600-38410200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:38403000-38409400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
36	chr10:38403600-38408800	ZNF genes & repeats	Osteobl	bone
37	chr10:38403600-38409000	ZNF genes & repeats	Brain Substantia Nigra	brain
38	chr10:38403800-38409000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
39	chr10:38403800-38412800	ZNF genes & repeats	Psoas Muscle	Psoas
40	chr10:38404000-38408800	ZNF genes & repeats	Stomach Mucosa	stomach
41	chr10:38404000-38411000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:38404200-38409000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
43	chr10:38405200-38408800	ZNF genes & repeats	NH-A	brain
44	chr10:38405200-38409800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:38405400-38408800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:38405400-38409000	ZNF genes & repeats	Fetal Brain Male	brain
47	chr10:38405400-38409000	ZNF genes & repeats	Fetal Heart	heart
48	chr10:38405400-38409800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
49	chr10:38405800-38410200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
50	chr10:38406200-38408600	Weak transcription	Lung	lung

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