Variant report

Variant	rs17664698
Chromosome Location	chr10:38417675-38417676
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10508862	1.00[AFR][1000 genomes]
rs11593864	1.00[AFR][1000 genomes]
rs11594192	1.00[AFR][1000 genomes]
rs11594193	1.00[AFR][1000 genomes]
rs11594576	1.00[AFR][1000 genomes]
rs11595211	1.00[AFR][1000 genomes]
rs11595912	1.00[AFR][1000 genomes]
rs11595951	1.00[AFR][1000 genomes]
rs11597265	1.00[AFR][1000 genomes]
rs11597703	1.00[AFR][1000 genomes]
rs11598302	1.00[AFR][1000 genomes]
rs1208549	1.00[AFR][1000 genomes]
rs1208550	1.00[AFR][1000 genomes]
rs1208551	1.00[AFR][1000 genomes]
rs1208553	1.00[AFR][1000 genomes]
rs1208557	1.00[AFR][1000 genomes]
rs1208558	1.00[AFR][1000 genomes]
rs1208563	1.00[AFR][1000 genomes]
rs1208564	1.00[AFR][1000 genomes]
rs1208565	1.00[AFR][1000 genomes]
rs1208566	1.00[AFR][1000 genomes]
rs1208567	1.00[AFR][1000 genomes]
rs1208568	1.00[AFR][1000 genomes]
rs1208569	1.00[AFR][1000 genomes]
rs1208571	1.00[AFR][1000 genomes]
rs1208574	1.00[AFR][1000 genomes]
rs1208577	1.00[AFR][1000 genomes]
rs1208579	1.00[AFR][1000 genomes]
rs1208581	1.00[AFR][1000 genomes]
rs1208583	1.00[AFR][1000 genomes]
rs1208584	1.00[AFR][1000 genomes]
rs1208586	1.00[AFR][1000 genomes]
rs1208589	1.00[AFR][1000 genomes]
rs1208590	1.00[AFR][1000 genomes]
rs1208593	1.00[AFR][1000 genomes]
rs1208594	1.00[AFR][1000 genomes]
rs1208598	1.00[AFR][1000 genomes]
rs1208599	1.00[AFR][1000 genomes]
rs1208602	1.00[AFR][1000 genomes]
rs1208604	1.00[AFR][1000 genomes]
rs1208605	1.00[AFR][1000 genomes]
rs1208606	1.00[AFR][1000 genomes]
rs1208651	1.00[AFR][1000 genomes]
rs1208652	1.00[AFR][1000 genomes]
rs1208655	1.00[AFR][1000 genomes]
rs1208656	1.00[AFR][1000 genomes]
rs1208657	1.00[AFR][1000 genomes]
rs1210991	1.00[AFR][1000 genomes]
rs12244294	0.88[EUR][1000 genomes]
rs12245632	0.86[EUR][1000 genomes]
rs12268465	0.88[EUR][1000 genomes]
rs12772607	0.88[EUR][1000 genomes]
rs16905726	0.88[EUR][1000 genomes]
rs16937696	0.88[EUR][1000 genomes]
rs1735587	1.00[AFR][1000 genomes]
rs1735591	1.00[AFR][1000 genomes]
rs17586860	1.00[AFR][1000 genomes]
rs17587699	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17587939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17588142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1779061	1.00[AFR][1000 genomes]
rs1779155	1.00[AFR][1000 genomes]
rs2026112	1.00[AFR][1000 genomes]
rs2178961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2211537	1.00[AFR][1000 genomes]
rs2472156	1.00[AFR][1000 genomes]
rs2472157	1.00[AFR][1000 genomes]
rs2472161	1.00[AFR][1000 genomes]
rs2472162	1.00[AFR][1000 genomes]
rs2472163	1.00[AFR][1000 genomes]
rs2472164	1.00[AFR][1000 genomes]
rs2472165	1.00[AFR][1000 genomes]
rs2472166	1.00[AFR][1000 genomes]
rs2472167	1.00[AFR][1000 genomes]
rs2472169	1.00[AFR][1000 genomes]
rs2474538	1.00[AFR][1000 genomes]
rs2474541	1.00[AFR][1000 genomes]
rs2474543	1.00[AFR][1000 genomes]
rs2474544	1.00[AFR][1000 genomes]
rs2474546	1.00[AFR][1000 genomes]
rs2474547	1.00[AFR][1000 genomes]
rs2474560	1.00[AFR][1000 genomes]
rs2474578	1.00[AFR][1000 genomes]
rs2480522	1.00[AFR][1000 genomes]
rs2480524	1.00[AFR][1000 genomes]
rs2504117	1.00[AFR][1000 genomes]
rs2504123	1.00[AFR][1000 genomes]
rs2504124	1.00[AFR][1000 genomes]
rs2504152	1.00[AFR][1000 genomes]
rs2504153	1.00[AFR][1000 genomes]
rs2504154	1.00[AFR][1000 genomes]
rs2505201	1.00[AFR][1000 genomes]
rs2505219	1.00[AFR][1000 genomes]
rs2505221	1.00[AFR][1000 genomes]
rs2505226	1.00[AFR][1000 genomes]
rs2505227	1.00[AFR][1000 genomes]
rs2505228	1.00[AFR][1000 genomes]
rs2505229	1.00[AFR][1000 genomes]
rs2505230	1.00[AFR][1000 genomes]
rs2505231	1.00[AFR][1000 genomes]
rs2505234	1.00[AFR][1000 genomes]
rs2505246	1.00[AFR][1000 genomes]
rs2977832	1.00[AFR][1000 genomes]
rs2983324	1.00[AFR][1000 genomes]
rs3207878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4934928	1.00[AFR][1000 genomes]
rs4934929	1.00[AFR][1000 genomes]
rs7085204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086341	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7098578	1.00[AFR][1000 genomes]
rs71491241	0.88[EUR][1000 genomes]
rs7393766	1.00[AFR][1000 genomes]
rs743100	1.00[AFR][1000 genomes]
rs7897675	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903054	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9418318	1.00[AFR][1000 genomes]
rs9418319	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv6465	chr10:38377662-38422125	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv895031	chr10:38402789-38464886	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38413400-38420400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:38415800-38429400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:38417400-38419600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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