Variant report

Variant	rs11595951
Chromosome Location	chr10:38264039-38264040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:38263953-38264145	ProgFib	skin:	n/a	n/a
2	POLR2A	chr10:38263988-38264130	MCF-7	breast:	n/a	n/a
3	POLR2A	chr10:38264006-38265982	NB4	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:38242058..38244138-chr10:38263364..38265414,2	K562	blood:
2	chr10:38262821..38267029-chr10:38297888..38300843,9	MCF-7	breast:
3	chr10:38260688..38263129-chr10:38263289..38264919,2	MCF-7	breast:
4	chr10:38259521..38261309-chr10:38263503..38265407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226447	TF binding region
ENSG00000189180	Chromatin interaction
ENSG00000266684	Chromatin interaction

Extended variants
information (count: 342 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:334)

rs_ID	r²[population]
rs10508862	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1148272	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1148273	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1148274	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148275	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148276	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148277	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148278	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148279	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148280	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1148281	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1148282	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148283	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148284	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148285	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148286	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148288	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148289	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148290	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148291	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148292	1.00[AFR][1000 genomes]
rs1148293	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148294	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1148295	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148296	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148297	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11593389	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11593422	0.84[EUR][1000 genomes]
rs11593648	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11593864	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11594192	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11594193	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11594576	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11594707	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11595211	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11595596	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11595912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11597265	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11597703	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11597806	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11598302	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208549	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1208550	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208551	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208553	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208557	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208558	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208561	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208562	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208563	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208564	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208565	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208566	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208567	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208568	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208569	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208571	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208574	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208577	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208579	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208581	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208583	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208584	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208585	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208586	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208589	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1208590	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1208593	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208594	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208598	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208599	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208600	0.85[EUR][1000 genomes]
rs1208602	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208604	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208605	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208606	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208610	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208611	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208612	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208613	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208614	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208615	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1208616	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208617	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208618	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1208620	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208622	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208623	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208624	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208625	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208626	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208628	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208629	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208631	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208632	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208634	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208635	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208636	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208639	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208642	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208644	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208646	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208647	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208648	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208649	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208650	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208651	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208652	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208655	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208656	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208657	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208659	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208660	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208661	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208662	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208664	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208665	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208666	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208667	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208668	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208669	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208670	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208671	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208672	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208673	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208674	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208676	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208677	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208678	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208679	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208680	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208682	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208685	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208686	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1208687	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1208688	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1208690	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1208692	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1208693	0.97[EUR][1000 genomes]
rs1208694	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1208696	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1208698	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1208699	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208701	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208702	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208703	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208704	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1208705	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208706	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208707	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208709	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208710	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208711	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208712	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208715	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208717	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208718	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208719	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208720	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208721	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208722	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208723	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208724	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208725	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208726	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208727	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208728	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208729	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208730	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208731	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208763	0.94[EUR][1000 genomes]
rs1208771	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208772	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208773	0.96[EUR][1000 genomes]
rs1208774	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208776	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208777	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1208778	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1209424	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1209748	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1210991	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1211000	0.96[EUR][1000 genomes]
rs1211422	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1211708	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1211709	0.96[EUR][1000 genomes]
rs1212107	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1322315	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1361894	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1419246	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1592338	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618829	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1620874	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1620971	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1621236	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1623969	0.89[EUR][1000 genomes]
rs1629948	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1735587	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735591	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735601	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735610	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735622	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735623	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735624	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735626	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735627	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1735628	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735631	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735634	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735635	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735636	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735637	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1742232	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1742233	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1742234	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1742236	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1742237	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1742238	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1742240	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1742242	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1743811	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1743812	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1743813	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1743814	0.94[EUR][1000 genomes]
rs17586860	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17587699	1.00[AFR][1000 genomes]
rs17587939	1.00[AFR][1000 genomes]
rs17588142	1.00[AFR][1000 genomes]
rs17591524	1.00[AFR][1000 genomes]
rs17607259	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17607266	0.81[EUR][1000 genomes]
rs17607344	0.81[EUR][1000 genomes]
rs17664698	1.00[AFR][1000 genomes]
rs1779009	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1779018	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779019	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779020	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779021	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779022	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779025	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1779028	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779029	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779030	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1779031	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779036	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779046	0.83[EUR][1000 genomes]
rs1779047	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1779048	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1779049	0.93[EUR][1000 genomes]
rs1779050	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1779051	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1779052	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1779053	0.90[EUR][1000 genomes]
rs1779061	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779066	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1779072	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779074	1.00[EUR][1000 genomes]
rs1779076	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779078	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779089	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779132	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779144	0.94[EUR][1000 genomes]
rs1779155	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2026112	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2178961	1.00[AFR][1000 genomes]
rs2211537	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2472156	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2472157	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2472161	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2472162	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2472163	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2472164	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2472165	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2472166	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2472167	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2472169	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2474538	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2474541	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2474543	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2474544	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2474546	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2474547	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2474560	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2474578	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2480522	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2480523	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2480524	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2504117	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2504123	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2504124	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2504152	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2504153	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2504154	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2505201	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2505219	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2505221	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2505226	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2505227	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2505228	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2505229	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2505230	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2505231	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2505234	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2505246	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2505254	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2977832	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2983324	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3117562	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3117563	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3207878	1.00[AFR][1000 genomes]
rs4934928	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4934929	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58001845	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs61735514	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076726	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7077782	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085204	1.00[AFR][1000 genomes]
rs7089949	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098578	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73241926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7393766	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs743100	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs767263	0.96[EUR][1000 genomes]
rs767264	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7897675	1.00[AFR][1000 genomes]
rs7903054	1.00[AFR][1000 genomes]
rs7916515	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs874860	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9299750	0.88[EUR][1000 genomes]
rs9418281	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9418282	0.84[EUR][1000 genomes]
rs9418284	0.91[EUR][1000 genomes]
rs9418285	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9418318	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9418319	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1052703	chr10:38174640-38266472	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11595951	ZNF248	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38239600-38264400	Weak transcription	Fetal Heart	heart
2	chr10:38239600-38264600	Weak transcription	Stomach Mucosa	stomach
3	chr10:38241800-38264400	Weak transcription	NHEK	skin
4	chr10:38242600-38264400	Weak transcription	HUVEC	blood vessel
5	chr10:38246400-38264400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:38254200-38264200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:38254200-38264400	Weak transcription	NH-A	brain
8	chr10:38254200-38264600	Weak transcription	Gastric	stomach
9	chr10:38254200-38264600	Weak transcription	Pancreas	Pancrea
10	chr10:38254400-38264400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:38254400-38264400	Weak transcription	Aorta	Aorta
12	chr10:38254600-38264200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:38254800-38264600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:38255600-38264600	Weak transcription	Spleen	Spleen
15	chr10:38256400-38264200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr10:38256600-38264600	Weak transcription	Lung	lung
17	chr10:38256800-38264600	Weak transcription	Placenta	Placenta
18	chr10:38256800-38264600	Weak transcription	Right Ventricle	heart
19	chr10:38257200-38264400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:38257400-38264400	Weak transcription	Fetal Intestine Small	intestine
21	chr10:38257400-38265000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:38258000-38264400	Weak transcription	HSMMtube	muscle
23	chr10:38258200-38264200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:38258600-38264200	Weak transcription	A549	lung
25	chr10:38258600-38264400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:38258600-38264400	Weak transcription	Osteobl	bone
27	chr10:38258600-38264600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:38258600-38264600	Weak transcription	Ovary	ovary
29	chr10:38259000-38264400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:38259400-38264400	Weak transcription	Fetal Intestine Large	intestine
31	chr10:38259400-38264400	Weak transcription	HSMM	muscle
32	chr10:38259800-38264200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr10:38259800-38264200	Weak transcription	Primary B cells from cord blood	blood
34	chr10:38259800-38264200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr10:38260000-38264400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:38260000-38264400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:38260000-38264400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr10:38260000-38264600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:38260200-38264200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:38260200-38264400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:38260200-38264600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:38260400-38264200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:38260400-38264400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:38260600-38264200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:38260600-38264400	Weak transcription	Fetal Stomach	stomach
46	chr10:38260600-38264600	Weak transcription	Left Ventricle	heart
47	chr10:38260800-38264200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:38260800-38264400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:38260800-38264400	Weak transcription	Fetal Muscle Leg	muscle
50	chr10:38262400-38264600	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links