Variant report

Variant	rs3207878
Chromosome Location	chr6:17717307-17717308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:17692085..17694224-chr6:17715238..17718127,2	K562	blood:

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10508862	1.00[AFR][1000 genomes]
rs11593864	1.00[AFR][1000 genomes]
rs11594192	1.00[AFR][1000 genomes]
rs11594193	1.00[AFR][1000 genomes]
rs11594576	1.00[AFR][1000 genomes]
rs11595211	1.00[AFR][1000 genomes]
rs11595912	1.00[AFR][1000 genomes]
rs11595951	1.00[AFR][1000 genomes]
rs11597265	1.00[AFR][1000 genomes]
rs11597703	1.00[AFR][1000 genomes]
rs11598302	1.00[AFR][1000 genomes]
rs1208549	1.00[AFR][1000 genomes]
rs1208550	1.00[AFR][1000 genomes]
rs1208551	1.00[AFR][1000 genomes]
rs1208553	1.00[AFR][1000 genomes]
rs1208557	1.00[AFR][1000 genomes]
rs1208558	1.00[AFR][1000 genomes]
rs1208563	1.00[AFR][1000 genomes]
rs1208564	1.00[AFR][1000 genomes]
rs1208565	1.00[AFR][1000 genomes]
rs1208566	1.00[AFR][1000 genomes]
rs1208567	1.00[AFR][1000 genomes]
rs1208568	1.00[AFR][1000 genomes]
rs1208569	1.00[AFR][1000 genomes]
rs1208571	1.00[AFR][1000 genomes]
rs1208574	1.00[AFR][1000 genomes]
rs1208577	1.00[AFR][1000 genomes]
rs1208579	1.00[AFR][1000 genomes]
rs1208581	1.00[AFR][1000 genomes]
rs1208583	1.00[AFR][1000 genomes]
rs1208584	1.00[AFR][1000 genomes]
rs1208586	1.00[AFR][1000 genomes]
rs1208589	1.00[AFR][1000 genomes]
rs1208590	1.00[AFR][1000 genomes]
rs1208593	1.00[AFR][1000 genomes]
rs1208594	1.00[AFR][1000 genomes]
rs1208598	1.00[AFR][1000 genomes]
rs1208599	1.00[AFR][1000 genomes]
rs1208602	1.00[AFR][1000 genomes]
rs1208604	1.00[AFR][1000 genomes]
rs1208605	1.00[AFR][1000 genomes]
rs1208606	1.00[AFR][1000 genomes]
rs1208651	1.00[AFR][1000 genomes]
rs1208652	1.00[AFR][1000 genomes]
rs1208655	1.00[AFR][1000 genomes]
rs1208656	1.00[AFR][1000 genomes]
rs1208657	1.00[AFR][1000 genomes]
rs1210991	1.00[AFR][1000 genomes]
rs12244294	0.83[EUR][1000 genomes]
rs12245632	0.81[EUR][1000 genomes]
rs12268465	0.83[EUR][1000 genomes]
rs12772607	0.83[EUR][1000 genomes]
rs1592338	1.00[AFR][1000 genomes]
rs16905726	0.83[EUR][1000 genomes]
rs16937696	0.83[EUR][1000 genomes]
rs1735587	1.00[AFR][1000 genomes]
rs1735591	1.00[AFR][1000 genomes]
rs1735634	1.00[AFR][1000 genomes]
rs1735635	1.00[AFR][1000 genomes]
rs1735636	1.00[AFR][1000 genomes]
rs1735637	1.00[AFR][1000 genomes]
rs17586860	1.00[AFR][1000 genomes]
rs17587699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17587939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17588142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17664698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1779028	1.00[AFR][1000 genomes]
rs1779029	1.00[AFR][1000 genomes]
rs1779031	1.00[AFR][1000 genomes]
rs1779061	1.00[AFR][1000 genomes]
rs1779155	1.00[AFR][1000 genomes]
rs2026112	1.00[AFR][1000 genomes]
rs2178961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2211537	1.00[AFR][1000 genomes]
rs2472156	1.00[AFR][1000 genomes]
rs2472157	1.00[AFR][1000 genomes]
rs2472161	1.00[AFR][1000 genomes]
rs2472162	1.00[AFR][1000 genomes]
rs2472163	1.00[AFR][1000 genomes]
rs2472164	1.00[AFR][1000 genomes]
rs2472165	1.00[AFR][1000 genomes]
rs2472166	1.00[AFR][1000 genomes]
rs2472167	1.00[AFR][1000 genomes]
rs2472169	1.00[AFR][1000 genomes]
rs2474538	1.00[AFR][1000 genomes]
rs2474541	1.00[AFR][1000 genomes]
rs2474543	1.00[AFR][1000 genomes]
rs2474544	1.00[AFR][1000 genomes]
rs2474546	1.00[AFR][1000 genomes]
rs2474547	1.00[AFR][1000 genomes]
rs2474560	1.00[AFR][1000 genomes]
rs2474578	1.00[AFR][1000 genomes]
rs2480522	1.00[AFR][1000 genomes]
rs2480524	1.00[AFR][1000 genomes]
rs2504117	1.00[AFR][1000 genomes]
rs2504123	1.00[AFR][1000 genomes]
rs2504124	1.00[AFR][1000 genomes]
rs2504152	1.00[AFR][1000 genomes]
rs2504153	1.00[AFR][1000 genomes]
rs2504154	1.00[AFR][1000 genomes]
rs2505201	1.00[AFR][1000 genomes]
rs2505219	1.00[AFR][1000 genomes]
rs2505221	1.00[AFR][1000 genomes]
rs2505226	1.00[AFR][1000 genomes]
rs2505227	1.00[AFR][1000 genomes]
rs2505228	1.00[AFR][1000 genomes]
rs2505229	1.00[AFR][1000 genomes]
rs2505230	1.00[AFR][1000 genomes]
rs2505231	1.00[AFR][1000 genomes]
rs2505234	1.00[AFR][1000 genomes]
rs2505246	1.00[AFR][1000 genomes]
rs2977832	1.00[AFR][1000 genomes]
rs2983324	1.00[AFR][1000 genomes]
rs4934928	1.00[AFR][1000 genomes]
rs4934929	1.00[AFR][1000 genomes]
rs61735514	1.00[AFR][1000 genomes]
rs7085204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7086341	0.86[EUR][1000 genomes]
rs7098578	1.00[AFR][1000 genomes]
rs71491241	0.83[EUR][1000 genomes]
rs7393766	1.00[AFR][1000 genomes]
rs743100	1.00[AFR][1000 genomes]
rs7897675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7903054	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9418318	1.00[AFR][1000 genomes]
rs9418319	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529416	chr6:17398163-17966788	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv949539	chr6:17459330-17831419	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv516012	chr6:17460176-17877224	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1018574	chr6:17480514-17932854	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv538149	chr6:17480514-17932854	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv1025488	chr6:17491088-17898515	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv462644	chr6:17493093-17893522	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv601046	chr6:17493093-17893522	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv1032741	chr6:17520055-17921622	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	nsv1030834	chr6:17524942-17819199	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv830596	chr6:17598022-17768042	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
12	nsv601047	chr6:17624060-17949353	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1023902	chr6:17675928-17892312	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:17708000-17762600	Weak transcription	Right Atrium	heart
2	chr6:17715800-17720000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:17715800-17720000	Weak transcription	Placenta	Placenta
4	chr6:17715800-17721200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:17715800-17725000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:17716800-17730000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:17716800-17730000	Weak transcription	NHEK	skin
8	chr6:17717000-17722000	Weak transcription	K562	blood

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